Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2907 and Dsui_2908 are separated by 55 nucleotides Dsui_2908 and Dsui_2909 are separated by 67 nucleotides
Dsui_2907: Dsui_2907 - homoserine dehydrogenase, at 3,109,963 to 3,111,273
_2907
Dsui_2908: Dsui_2908 - aspartate/tyrosine/aromatic aminotransferase, at 3,111,329 to 3,112,555
_2908
Dsui_2909: Dsui_2909 - aspartate/tyrosine/aromatic aminotransferase, at 3,112,623 to 3,113,810
_2909
Position (kb)
3111
3112
3113 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3111.289 kb on - strand at 3111.335 kb on + strand at 3111.395 kb on - strand at 3111.439 kb on - strand at 3111.756 kb on + strand at 3111.931 kb on - strand, within Dsui_2908 at 3112.166 kb on - strand, within Dsui_2908 at 3112.211 kb on - strand, within Dsui_2908 at 3112.256 kb on - strand, within Dsui_2908 at 3112.318 kb on - strand, within Dsui_2908 at 3112.346 kb on - strand, within Dsui_2908 at 3112.632 kb on - strand at 3112.757 kb on + strand, within Dsui_2909 at 3112.839 kb on + strand, within Dsui_2909 at 3112.891 kb on + strand, within Dsui_2909 at 3112.899 kb on - strand, within Dsui_2909 at 3112.924 kb on - strand, within Dsui_2909 at 3112.947 kb on + strand, within Dsui_2909 at 3112.955 kb on - strand, within Dsui_2909 at 3112.955 kb on - strand, within Dsui_2909 at 3112.957 kb on - strand, within Dsui_2909 at 3112.980 kb on - strand, within Dsui_2909 at 3113.019 kb on - strand, within Dsui_2909 at 3113.046 kb on - strand, within Dsui_2909 at 3113.048 kb on - strand, within Dsui_2909 at 3113.144 kb on + strand, within Dsui_2909 at 3113.215 kb on - strand, within Dsui_2909 at 3113.284 kb on - strand, within Dsui_2909 at 3113.317 kb on - strand, within Dsui_2909 at 3113.386 kb on + strand at 3113.394 kb on - strand, within Dsui_2909 at 3113.476 kb on - strand, within Dsui_2909 at 3113.476 kb on - strand, within Dsui_2909 at 3113.491 kb on - strand, within Dsui_2909 at 3113.501 kb on - strand, within Dsui_2909
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,111,289 - +2.2 3,111,335 + +0.8 3,111,395 - +3.3 3,111,439 - +2.8 3,111,756 + +0.8 3,111,931 - Dsui_2908 0.49 +3.7 3,112,166 - Dsui_2908 0.68 +2.8 3,112,211 - Dsui_2908 0.72 +2.7 3,112,256 - Dsui_2908 0.76 +3.3 3,112,318 - Dsui_2908 0.81 +3.4 3,112,346 - Dsui_2908 0.83 +2.7 3,112,632 - -0.1 3,112,757 + Dsui_2909 0.11 +0.8 3,112,839 + Dsui_2909 0.18 -1.8 3,112,891 + Dsui_2909 0.23 -0.2 3,112,899 - Dsui_2909 0.23 +0.5 3,112,924 - Dsui_2909 0.25 -1.2 3,112,947 + Dsui_2909 0.27 -0.2 3,112,955 - Dsui_2909 0.28 -0.2 3,112,955 - Dsui_2909 0.28 +0.4 3,112,957 - Dsui_2909 0.28 -0.2 3,112,980 - Dsui_2909 0.30 -0.6 3,113,019 - Dsui_2909 0.33 -0.1 3,113,046 - Dsui_2909 0.36 -0.1 3,113,048 - Dsui_2909 0.36 -0.1 3,113,144 + Dsui_2909 0.44 +0.8 3,113,215 - Dsui_2909 0.50 +0.0 3,113,284 - Dsui_2909 0.56 +0.9 3,113,317 - Dsui_2909 0.58 +0.1 3,113,386 + -0.2 3,113,394 - Dsui_2909 0.65 +0.3 3,113,476 - Dsui_2909 0.72 +0.2 3,113,476 - Dsui_2909 0.72 +0.9 3,113,491 - Dsui_2909 0.73 +0.1 3,113,501 - Dsui_2909 0.74 +0.0
Or see this region's nucleotide sequence