Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2892 and Dsui_2893 are separated by 67 nucleotides Dsui_2893 and Dsui_2894 are separated by 103 nucleotides
Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596
_2892
Dsui_2893: Dsui_2893 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,092,664 to 3,094,172
_2893
Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444
_2894
Position (kb)
3092
3093
3094
3095 Strain fitness (log2 ratio)
-2
-1
0
1 at 3092.680 kb on - strand at 3092.963 kb on - strand, within Dsui_2893 at 3092.991 kb on + strand at 3093.092 kb on + strand, within Dsui_2893 at 3093.094 kb on - strand, within Dsui_2893 at 3093.129 kb on + strand at 3093.169 kb on - strand, within Dsui_2893 at 3093.180 kb on - strand, within Dsui_2893 at 3093.317 kb on + strand at 3093.358 kb on + strand at 3093.445 kb on - strand, within Dsui_2893 at 3093.631 kb on - strand, within Dsui_2893 at 3093.709 kb on - strand, within Dsui_2893 at 3093.713 kb on + strand, within Dsui_2893 at 3094.029 kb on + strand at 3094.042 kb on - strand at 3094.084 kb on - strand at 3094.105 kb on - strand at 3094.133 kb on + strand at 3094.141 kb on - strand at 3094.344 kb on + strand at 3094.421 kb on - strand at 3094.550 kb on + strand, within Dsui_2894 at 3094.595 kb on + strand at 3094.666 kb on + strand at 3094.674 kb on - strand, within Dsui_2894 at 3094.734 kb on - strand, within Dsui_2894 at 3094.800 kb on - strand, within Dsui_2894 at 3094.827 kb on - strand, within Dsui_2894 at 3094.878 kb on - strand, within Dsui_2894 at 3094.946 kb on - strand, within Dsui_2894 at 3094.952 kb on + strand at 3095.047 kb on - strand, within Dsui_2894 at 3095.094 kb on - strand, within Dsui_2894
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,092,680 - +0.8 3,092,963 - Dsui_2893 0.20 +0.8 3,092,991 + +0.8 3,093,092 + Dsui_2893 0.28 -2.2 3,093,094 - Dsui_2893 0.28 -0.2 3,093,129 + +0.8 3,093,169 - Dsui_2893 0.33 -2.4 3,093,180 - Dsui_2893 0.34 -1.8 3,093,317 + +0.8 3,093,358 + +0.8 3,093,445 - Dsui_2893 0.52 -1.8 3,093,631 - Dsui_2893 0.64 -1.6 3,093,709 - Dsui_2893 0.69 -0.2 3,093,713 + Dsui_2893 0.70 -0.8 3,094,029 + -0.2 3,094,042 - -0.4 3,094,084 - -0.5 3,094,105 - -0.2 3,094,133 + +0.8 3,094,141 - -0.5 3,094,344 + +0.8 3,094,421 - +0.8 3,094,550 + Dsui_2894 0.13 +0.8 3,094,595 + +0.8 3,094,666 + +0.8 3,094,674 - Dsui_2894 0.18 -0.8 3,094,734 - Dsui_2894 0.21 +0.8 3,094,800 - Dsui_2894 0.24 +0.8 3,094,827 - Dsui_2894 0.25 +0.8 3,094,878 - Dsui_2894 0.28 -1.2 3,094,946 - Dsui_2894 0.31 -1.2 3,094,952 + +0.8 3,095,047 - Dsui_2894 0.36 -0.8 3,095,094 - Dsui_2894 0.38 -0.8
Or see this region's nucleotide sequence