Strain Fitness in Dechlorosoma suillum PS around Dsui_2866

Experiment: ALP with Fusidic 0.007 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2864 and Dsui_2865 overlap by 4 nucleotidesDsui_2865 and Dsui_2866 are separated by 1 nucleotidesDsui_2866 and Dsui_2867 are separated by 271 nucleotides Dsui_2864: Dsui_2864 - signal transduction histidine kinase, at 3,055,598 to 3,058,393 _2864 Dsui_2865: Dsui_2865 - hypothetical protein, at 3,058,390 to 3,058,920 _2865 Dsui_2866: Dsui_2866 - outer membrane receptor for ferrienterochelin and colicins, at 3,058,922 to 3,060,874 _2866 Dsui_2867: Dsui_2867 - surface antigen family protein, at 3,061,146 to 3,061,844 _2867 Position (kb) 3058 3059 3060 3061Strain fitness (log2 ratio) -2 -1 0 1at 3058.095 kb on - strand, within Dsui_2864at 3058.121 kb on + strandat 3058.179 kb on + strandat 3058.323 kb on - strandat 3058.373 kb on - strandat 3058.399 kb on - strandat 3058.515 kb on + strand, within Dsui_2865at 3058.548 kb on - strand, within Dsui_2865at 3058.594 kb on + strandat 3058.644 kb on + strandat 3058.652 kb on - strandat 3058.668 kb on - strandat 3058.675 kb on + strandat 3058.718 kb on - strand, within Dsui_2865at 3058.781 kb on - strand, within Dsui_2865at 3058.883 kb on - strandat 3058.972 kb on + strandat 3059.010 kb on + strandat 3059.108 kb on - strandat 3059.164 kb on + strand, within Dsui_2866at 3059.439 kb on - strand, within Dsui_2866at 3059.439 kb on - strand, within Dsui_2866at 3059.484 kb on - strand, within Dsui_2866at 3059.569 kb on - strand, within Dsui_2866at 3059.915 kb on - strand, within Dsui_2866at 3060.050 kb on - strand, within Dsui_2866at 3060.302 kb on - strand, within Dsui_2866at 3060.468 kb on - strandat 3060.482 kb on - strand, within Dsui_2866at 3060.544 kb on - strand, within Dsui_2866at 3060.605 kb on - strand, within Dsui_2866at 3060.605 kb on - strand, within Dsui_2866at 3060.716 kb on - strandat 3060.797 kb on + strandat 3060.891 kb on - strandat 3061.082 kb on + strandat 3061.136 kb on + strandat 3061.424 kb on + strand, within Dsui_2867at 3061.424 kb on + strand, within Dsui_2867at 3061.472 kb on + strand, within Dsui_2867at 3061.555 kb on - strandat 3061.750 kb on + strand, within Dsui_2867at 3061.755 kb on + strandat 3061.805 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
remove
3,058,095 - Dsui_2864 0.89 -2.0
3,058,121 + +0.8
3,058,179 + +0.8
3,058,323 - +0.8
3,058,373 - -0.2
3,058,399 - +0.8
3,058,515 + Dsui_2865 0.24 -2.2
3,058,548 - Dsui_2865 0.30 -0.2
3,058,594 + +0.8
3,058,644 + +0.8
3,058,652 - +0.8
3,058,668 - +0.8
3,058,675 + +0.8
3,058,718 - Dsui_2865 0.62 +0.8
3,058,781 - Dsui_2865 0.74 -2.2
3,058,883 - +0.8
3,058,972 + -1.2
3,059,010 + +0.8
3,059,108 - +0.8
3,059,164 + Dsui_2866 0.12 -2.2
3,059,439 - Dsui_2866 0.26 -0.2
3,059,439 - Dsui_2866 0.26 +0.8
3,059,484 - Dsui_2866 0.29 -0.2
3,059,569 - Dsui_2866 0.33 -2.0
3,059,915 - Dsui_2866 0.51 -1.8
3,060,050 - Dsui_2866 0.58 -2.0
3,060,302 - Dsui_2866 0.71 -0.2
3,060,468 - +0.8
3,060,482 - Dsui_2866 0.80 -1.2
3,060,544 - Dsui_2866 0.83 -2.0
3,060,605 - Dsui_2866 0.86 -0.8
3,060,605 - Dsui_2866 0.86 -0.2
3,060,716 - +0.8
3,060,797 + +0.8
3,060,891 - +0.8
3,061,082 + -0.8
3,061,136 + -1.5
3,061,424 + Dsui_2867 0.40 -0.2
3,061,424 + Dsui_2867 0.40 -0.8
3,061,472 + Dsui_2867 0.47 +0.8
3,061,555 - +0.8
3,061,750 + Dsui_2867 0.86 -1.2
3,061,755 + -0.2
3,061,805 + -0.2

Or see this region's nucleotide sequence