Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2813 and Dsui_2814 are separated by 231 nucleotides Dsui_2814 and Dsui_2815 are separated by 256 nucleotides Dsui_2815 and Dsui_2816 are separated by 110 nucleotides
Dsui_2813: Dsui_2813 - exopolyphosphatase, at 2,986,688 to 2,988,223
_2813
Dsui_2814: Dsui_2814 - polyphosphate kinase 1, at 2,988,455 to 2,990,563
_2814
Dsui_2815: Dsui_2815 - putative flavoprotein, at 2,990,820 to 2,991,386
_2815
Dsui_2816: Dsui_2816 - (p)ppGpp synthetase, RelA/SpoT family, at 2,991,497 to 2,993,719
_2816
Position (kb)
2988
2989
2990
2991 Strain fitness (log2 ratio)
-2
-1
0
1 at 2987.730 kb on - strand, within Dsui_2813 at 2987.732 kb on + strand, within Dsui_2813 at 2987.828 kb on + strand at 2987.833 kb on - strand, within Dsui_2813 at 2987.923 kb on - strand, within Dsui_2813 at 2987.923 kb on - strand, within Dsui_2813 at 2987.925 kb on + strand, within Dsui_2813 at 2987.952 kb on - strand, within Dsui_2813 at 2988.102 kb on - strand at 2988.135 kb on + strand at 2988.162 kb on - strand at 2988.196 kb on - strand at 2988.263 kb on - strand at 2988.431 kb on + strand at 2988.431 kb on + strand at 2988.431 kb on + strand at 2988.439 kb on - strand at 2988.439 kb on - strand at 2988.439 kb on - strand at 2988.510 kb on + strand at 2988.598 kb on + strand at 2988.788 kb on - strand, within Dsui_2814 at 2988.908 kb on + strand, within Dsui_2814 at 2988.927 kb on - strand at 2989.078 kb on + strand, within Dsui_2814 at 2989.106 kb on - strand, within Dsui_2814 at 2989.145 kb on + strand, within Dsui_2814 at 2989.145 kb on - strand, within Dsui_2814 at 2989.378 kb on + strand, within Dsui_2814 at 2989.458 kb on - strand at 2989.609 kb on - strand, within Dsui_2814 at 2989.660 kb on + strand, within Dsui_2814 at 2989.662 kb on + strand, within Dsui_2814 at 2989.675 kb on - strand, within Dsui_2814 at 2989.890 kb on + strand, within Dsui_2814 at 2989.897 kb on + strand, within Dsui_2814 at 2989.905 kb on - strand, within Dsui_2814 at 2989.921 kb on - strand, within Dsui_2814 at 2989.987 kb on + strand, within Dsui_2814 at 2989.994 kb on + strand, within Dsui_2814 at 2989.995 kb on - strand, within Dsui_2814 at 2990.018 kb on + strand, within Dsui_2814 at 2990.019 kb on + strand, within Dsui_2814 at 2990.071 kb on + strand, within Dsui_2814 at 2990.071 kb on + strand, within Dsui_2814 at 2990.071 kb on + strand, within Dsui_2814 at 2990.079 kb on - strand, within Dsui_2814 at 2990.197 kb on - strand, within Dsui_2814 at 2990.428 kb on - strand at 2990.436 kb on - strand at 2990.512 kb on + strand at 2990.697 kb on + strand at 2990.747 kb on + strand at 2990.747 kb on + strand at 2990.755 kb on - strand at 2990.755 kb on - strand at 2990.798 kb on - strand at 2990.853 kb on - strand at 2990.871 kb on - strand at 2990.916 kb on + strand, within Dsui_2815 at 2991.015 kb on + strand, within Dsui_2815 at 2991.118 kb on + strand, within Dsui_2815 at 2991.219 kb on + strand, within Dsui_2815 at 2991.227 kb on - strand, within Dsui_2815 at 2991.262 kb on - strand, within Dsui_2815 at 2991.296 kb on + strand, within Dsui_2815 at 2991.363 kb on + strand at 2991.388 kb on - strand at 2991.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,987,730 - Dsui_2813 0.68 +0.1 2,987,732 + Dsui_2813 0.68 -1.9 2,987,828 + -0.7 2,987,833 - Dsui_2813 0.75 +0.1 2,987,923 - Dsui_2813 0.80 +1.0 2,987,923 - Dsui_2813 0.80 +0.8 2,987,925 + Dsui_2813 0.81 +0.9 2,987,952 - Dsui_2813 0.82 -0.4 2,988,102 - -1.4 2,988,135 + -0.1 2,988,162 - +0.5 2,988,196 - -0.4 2,988,263 - +0.1 2,988,431 + +0.8 2,988,431 + +0.1 2,988,431 + -0.2 2,988,439 - -0.7 2,988,439 - -1.7 2,988,439 - -0.7 2,988,510 + -1.1 2,988,598 + -2.6 2,988,788 - Dsui_2814 0.16 -1.7 2,988,908 + Dsui_2814 0.21 +0.8 2,988,927 - +0.9 2,989,078 + Dsui_2814 0.30 -1.1 2,989,106 - Dsui_2814 0.31 -0.1 2,989,145 + Dsui_2814 0.33 -0.4 2,989,145 - Dsui_2814 0.33 +0.9 2,989,378 + Dsui_2814 0.44 -0.5 2,989,458 - +0.9 2,989,609 - Dsui_2814 0.55 -0.7 2,989,660 + Dsui_2814 0.57 -0.6 2,989,662 + Dsui_2814 0.57 -0.1 2,989,675 - Dsui_2814 0.58 -2.1 2,989,890 + Dsui_2814 0.68 -0.0 2,989,897 + Dsui_2814 0.68 -1.6 2,989,905 - Dsui_2814 0.69 -1.1 2,989,921 - Dsui_2814 0.70 +0.9 2,989,987 + Dsui_2814 0.73 -0.3 2,989,994 + Dsui_2814 0.73 -2.3 2,989,995 - Dsui_2814 0.73 +0.9 2,990,018 + Dsui_2814 0.74 -1.0 2,990,019 + Dsui_2814 0.74 +0.2 2,990,071 + Dsui_2814 0.77 -1.0 2,990,071 + Dsui_2814 0.77 -0.9 2,990,071 + Dsui_2814 0.77 -0.7 2,990,079 - Dsui_2814 0.77 -0.1 2,990,197 - Dsui_2814 0.83 -0.7 2,990,428 - +0.9 2,990,436 - -1.9 2,990,512 + +0.6 2,990,697 + -1.9 2,990,747 + -0.7 2,990,747 + +0.9 2,990,755 - -0.1 2,990,755 - +0.9 2,990,798 - +0.9 2,990,853 - -1.1 2,990,871 - -0.7 2,990,916 + Dsui_2815 0.17 -1.4 2,991,015 + Dsui_2815 0.34 -0.7 2,991,118 + Dsui_2815 0.53 -2.4 2,991,219 + Dsui_2815 0.70 -0.7 2,991,227 - Dsui_2815 0.72 +0.9 2,991,262 - Dsui_2815 0.78 -0.7 2,991,296 + Dsui_2815 0.84 -2.1 2,991,363 + +0.9 2,991,388 - -1.9 2,991,468 - -0.1
Or see this region's nucleotide sequence