Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2809 and Dsui_2810 overlap by 4 nucleotides Dsui_2810 and Dsui_2811 are separated by 19 nucleotides Dsui_2811 and Dsui_2812 overlap by 4 nucleotides
Dsui_2809: Dsui_2809 - ABC-type uncharacterized transport system, auxiliary component, at 2,983,271 to 2,983,858
_2809
Dsui_2810: Dsui_2810 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 2,983,855 to 2,984,778
_2810
Dsui_2811: Dsui_2811 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 2,984,798 to 2,985,571
_2811
Dsui_2812: Dsui_2812 - conserved hypothetical integral membrane protein, at 2,985,568 to 2,986,683
_2812
Position (kb)
2984
2985
2986 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2983.827 kb on - strand at 2983.861 kb on - strand at 2984.498 kb on - strand, within Dsui_2810 at 2984.511 kb on + strand at 2984.718 kb on - strand at 2984.734 kb on - strand at 2984.737 kb on + strand at 2984.803 kb on - strand at 2984.994 kb on - strand, within Dsui_2811 at 2985.106 kb on - strand at 2985.161 kb on - strand, within Dsui_2811 at 2985.161 kb on - strand, within Dsui_2811 at 2985.281 kb on - strand, within Dsui_2811 at 2985.293 kb on - strand, within Dsui_2811 at 2985.438 kb on + strand at 2985.609 kb on - strand at 2985.646 kb on - strand at 2985.674 kb on - strand at 2985.685 kb on + strand at 2985.712 kb on + strand at 2985.793 kb on - strand, within Dsui_2812 at 2985.812 kb on + strand at 2985.847 kb on - strand, within Dsui_2812 at 2985.902 kb on + strand at 2985.927 kb on + strand at 2986.149 kb on - strand, within Dsui_2812 at 2986.155 kb on - strand, within Dsui_2812 at 2986.160 kb on - strand, within Dsui_2812 at 2986.198 kb on - strand, within Dsui_2812 at 2986.325 kb on - strand, within Dsui_2812 at 2986.500 kb on + strand at 2986.508 kb on - strand, within Dsui_2812 at 2986.508 kb on - strand at 2986.518 kb on + strand, within Dsui_2812
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,983,827 - -0.1 2,983,861 - -1.1 2,984,498 - Dsui_2810 0.70 +0.9 2,984,511 + +0.9 2,984,718 - +0.9 2,984,734 - -1.1 2,984,737 + +0.9 2,984,803 - +0.9 2,984,994 - Dsui_2811 0.25 -0.7 2,985,106 - +0.9 2,985,161 - Dsui_2811 0.47 +0.9 2,985,161 - Dsui_2811 0.47 -1.9 2,985,281 - Dsui_2811 0.62 +0.9 2,985,293 - Dsui_2811 0.64 -0.1 2,985,438 + +0.9 2,985,609 - -0.7 2,985,646 - -1.1 2,985,674 - -0.7 2,985,685 + +0.9 2,985,712 + +0.9 2,985,793 - Dsui_2812 0.20 -0.7 2,985,812 + +0.9 2,985,847 - Dsui_2812 0.25 +0.9 2,985,902 + -0.1 2,985,927 + -1.1 2,986,149 - Dsui_2812 0.52 +0.9 2,986,155 - Dsui_2812 0.53 +1.9 2,986,160 - Dsui_2812 0.53 +0.9 2,986,198 - Dsui_2812 0.56 -0.4 2,986,325 - Dsui_2812 0.68 +2.2 2,986,500 + -0.1 2,986,508 - Dsui_2812 0.84 +1.0 2,986,508 - -0.1 2,986,518 + Dsui_2812 0.85 -0.1
Or see this region's nucleotide sequence