Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2804 and Dsui_2805 are separated by 40 nucleotides Dsui_2805 and Dsui_2806 are separated by 53 nucleotides
Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557
_2804
Dsui_2805: Dsui_2805 - EamA-like transporter family, at 2,976,598 to 2,977,467
_2805
Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562
_2806
Position (kb)
2976
2977
2978 Strain fitness (log2 ratio)
-2
-1
0
1 at 2975.779 kb on + strand at 2975.793 kb on - strand, within Dsui_2804 at 2975.999 kb on - strand, within Dsui_2804 at 2976.163 kb on - strand, within Dsui_2804 at 2976.168 kb on - strand, within Dsui_2804 at 2976.410 kb on + strand at 2976.507 kb on + strand at 2976.537 kb on - strand at 2976.539 kb on + strand at 2976.539 kb on + strand at 2976.819 kb on - strand, within Dsui_2805 at 2976.963 kb on - strand, within Dsui_2805 at 2977.097 kb on - strand, within Dsui_2805 at 2977.433 kb on + strand at 2977.433 kb on + strand at 2977.441 kb on - strand at 2977.441 kb on - strand at 2977.451 kb on - strand at 2977.487 kb on + strand at 2977.490 kb on - strand at 2977.518 kb on - strand at 2977.567 kb on - strand at 2977.615 kb on - strand at 2977.667 kb on + strand at 2977.687 kb on - strand at 2977.736 kb on + strand at 2977.867 kb on - strand, within Dsui_2806 at 2978.097 kb on - strand, within Dsui_2806 at 2978.228 kb on + strand at 2978.234 kb on - strand, within Dsui_2806 at 2978.281 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,975,779 + -0.1 2,975,793 - Dsui_2804 0.53 +0.6 2,975,999 - Dsui_2804 0.65 -0.2 2,976,163 - Dsui_2804 0.76 +0.1 2,976,168 - Dsui_2804 0.76 -0.2 2,976,410 + +0.9 2,976,507 + +0.9 2,976,537 - +0.1 2,976,539 + -0.7 2,976,539 + -1.4 2,976,819 - Dsui_2805 0.25 +0.9 2,976,963 - Dsui_2805 0.42 -2.6 2,977,097 - Dsui_2805 0.57 -0.7 2,977,433 + -0.1 2,977,433 + +0.9 2,977,441 - -0.4 2,977,441 - -0.1 2,977,451 - +0.5 2,977,487 + +0.9 2,977,490 - -1.1 2,977,518 - +1.2 2,977,567 - -1.1 2,977,615 - +0.9 2,977,667 + +0.9 2,977,687 - -0.1 2,977,736 + +0.9 2,977,867 - Dsui_2806 0.11 -1.7 2,978,097 - Dsui_2806 0.19 +0.9 2,978,228 + +0.9 2,978,234 - Dsui_2806 0.23 +0.9 2,978,281 - +0.9
Or see this region's nucleotide sequence