Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2713 and Dsui_2714 are separated by 60 nucleotides Dsui_2714 and Dsui_2715 are separated by 14 nucleotides Dsui_2715 and Dsui_2716 are separated by 36 nucleotides Dsui_2716 and Dsui_2717 are separated by 143 nucleotides Dsui_2717 and Dsui_2718 are separated by 115 nucleotides
Dsui_2713: Dsui_2713 - membrane protease subunit, stomatin/prohibitin, at 2,870,148 to 2,871,041
_2713
Dsui_2714: Dsui_2714 - tRNA-His, at 2,871,102 to 2,871,177
_2714
Dsui_2715: Dsui_2715 - tRNA-Arg, at 2,871,192 to 2,871,268
_2715
Dsui_2716: Dsui_2716 - tRNA-Pro, at 2,871,305 to 2,871,381
_2716
Dsui_2717: Dsui_2717 - RNA polymerase-binding protein DksA, at 2,871,525 to 2,871,950
_2717
Dsui_2718: Dsui_2718 - polyribonucleotide nucleotidyltransferase, at 2,872,066 to 2,874,189
_2718
Position (kb)
2871
2872 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2870.574 kb on + strand, within Dsui_2713 at 2870.628 kb on - strand, within Dsui_2713 at 2870.656 kb on - strand, within Dsui_2713 at 2870.726 kb on + strand, within Dsui_2713 at 2870.726 kb on + strand, within Dsui_2713 at 2870.818 kb on - strand, within Dsui_2713 at 2870.878 kb on - strand, within Dsui_2713 at 2870.992 kb on + strand at 2871.000 kb on - strand at 2871.009 kb on + strand at 2871.295 kb on - strand at 2871.528 kb on + strand at 2871.585 kb on + strand, within Dsui_2717 at 2871.644 kb on + strand, within Dsui_2717 at 2871.669 kb on + strand, within Dsui_2717 at 2871.696 kb on + strand, within Dsui_2717 at 2871.742 kb on + strand, within Dsui_2717 at 2871.870 kb on + strand, within Dsui_2717 at 2872.321 kb on - strand, within Dsui_2718 at 2872.327 kb on - strand, within Dsui_2718
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,870,574 + Dsui_2713 0.48 -1.5 2,870,628 - Dsui_2713 0.54 -0.8 2,870,656 - Dsui_2713 0.57 -2.2 2,870,726 + Dsui_2713 0.65 +1.2 2,870,726 + Dsui_2713 0.65 -0.2 2,870,818 - Dsui_2713 0.75 -0.8 2,870,878 - Dsui_2713 0.82 -0.8 2,870,992 + -1.0 2,871,000 - -0.5 2,871,009 + -0.2 2,871,295 - +2.3 2,871,528 + -3.4 2,871,585 + Dsui_2717 0.14 -5.2 2,871,644 + Dsui_2717 0.28 -2.9 2,871,669 + Dsui_2717 0.34 -2.0 2,871,696 + Dsui_2717 0.40 -3.1 2,871,742 + Dsui_2717 0.51 -2.9 2,871,870 + Dsui_2717 0.81 -3.0 2,872,321 - Dsui_2718 0.12 +0.6 2,872,327 - Dsui_2718 0.12 +0.0
Or see this region's nucleotide sequence