Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2658 and Dsui_2659 are separated by 329 nucleotides Dsui_2659 and Dsui_2660 are separated by 114 nucleotides Dsui_2660 and Dsui_2661 overlap by 4 nucleotides Dsui_2661 and Dsui_2662 are separated by 139 nucleotides
Dsui_2658: Dsui_2658 - hypothetical protein, at 2,813,441 to 2,814,190
_2658
Dsui_2659: Dsui_2659 - cold shock protein, at 2,814,520 to 2,814,723
_2659
Dsui_2660: Dsui_2660 - hypothetical protein, at 2,814,838 to 2,815,320
_2660
Dsui_2661: Dsui_2661 - cytosine/adenosine deaminase, at 2,815,317 to 2,815,778
_2661
Dsui_2662: Dsui_2662 - hypothetical protein, at 2,815,918 to 2,816,817
_2662
Position (kb)
2814
2815
2816 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2813.850 kb on + strand, within Dsui_2658 at 2813.886 kb on + strand, within Dsui_2658 at 2813.889 kb on - strand, within Dsui_2658 at 2813.946 kb on + strand, within Dsui_2658 at 2813.959 kb on - strand, within Dsui_2658 at 2814.004 kb on + strand, within Dsui_2658 at 2814.055 kb on - strand at 2814.062 kb on + strand, within Dsui_2658 at 2814.120 kb on + strand at 2814.193 kb on - strand at 2814.223 kb on + strand at 2814.351 kb on + strand at 2814.351 kb on + strand at 2814.352 kb on + strand at 2814.353 kb on + strand at 2814.362 kb on - strand at 2814.380 kb on + strand at 2814.380 kb on + strand at 2814.380 kb on + strand at 2814.388 kb on - strand at 2814.420 kb on + strand at 2814.420 kb on + strand at 2814.425 kb on + strand at 2814.428 kb on - strand at 2814.428 kb on - strand at 2814.428 kb on - strand at 2814.430 kb on + strand at 2814.430 kb on + strand at 2814.433 kb on - strand at 2814.433 kb on - strand at 2814.433 kb on - strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on - strand at 2814.438 kb on - strand at 2814.443 kb on + strand at 2814.443 kb on + strand at 2814.446 kb on - strand at 2814.446 kb on - strand at 2814.457 kb on + strand at 2814.465 kb on - strand at 2814.474 kb on + strand at 2814.474 kb on + strand at 2814.482 kb on - strand at 2814.482 kb on - strand at 2814.533 kb on + strand at 2814.533 kb on + strand at 2814.533 kb on + strand at 2814.533 kb on - strand at 2814.559 kb on + strand, within Dsui_2659 at 2814.579 kb on + strand, within Dsui_2659 at 2814.587 kb on - strand at 2814.587 kb on - strand at 2814.590 kb on + strand, within Dsui_2659 at 2814.677 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.699 kb on + strand, within Dsui_2659 at 2814.716 kb on - strand at 2814.718 kb on + strand at 2814.718 kb on + strand at 2814.726 kb on - strand at 2814.816 kb on + strand at 2814.821 kb on + strand at 2814.824 kb on - strand at 2814.829 kb on - strand at 2814.830 kb on - strand at 2814.843 kb on - strand at 2814.851 kb on - strand at 2815.330 kb on + strand at 2815.848 kb on - strand at 2815.848 kb on - strand at 2815.929 kb on + strand at 2815.929 kb on + strand at 2815.988 kb on + strand at 2816.006 kb on - strand at 2816.065 kb on - strand, within Dsui_2662 at 2816.067 kb on + strand at 2816.075 kb on - strand, within Dsui_2662 at 2816.077 kb on - strand at 2816.160 kb on + strand, within Dsui_2662 at 2816.179 kb on - strand at 2816.209 kb on + strand at 2816.217 kb on - strand, within Dsui_2662 at 2816.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,813,850 + Dsui_2658 0.55 +1.7 2,813,886 + Dsui_2658 0.59 -0.1 2,813,889 - Dsui_2658 0.60 +0.8 2,813,946 + Dsui_2658 0.67 -0.5 2,813,959 - Dsui_2658 0.69 +0.8 2,814,004 + Dsui_2658 0.75 +0.4 2,814,055 - +0.8 2,814,062 + Dsui_2658 0.83 -0.0 2,814,120 + +0.4 2,814,193 - -0.2 2,814,223 + -0.2 2,814,351 + +0.5 2,814,351 + -0.1 2,814,352 + -1.0 2,814,353 + +0.8 2,814,362 - -0.2 2,814,380 + -0.1 2,814,380 + -0.5 2,814,380 + +0.3 2,814,388 - -0.8 2,814,420 + -0.4 2,814,420 + +0.0 2,814,425 + -0.4 2,814,428 - -0.8 2,814,428 - -1.2 2,814,428 - +0.8 2,814,430 + -0.3 2,814,430 + -0.2 2,814,433 - -0.8 2,814,433 - +0.8 2,814,433 - -0.2 2,814,438 + -0.4 2,814,438 + -0.5 2,814,438 + -0.4 2,814,438 + -0.2 2,814,438 - +0.8 2,814,438 - +0.8 2,814,443 + -0.3 2,814,443 + +0.1 2,814,446 - +0.8 2,814,446 - +0.8 2,814,457 + -0.3 2,814,465 - +0.8 2,814,474 + -0.5 2,814,474 + -0.2 2,814,482 - +0.8 2,814,482 - -0.2 2,814,533 + +0.1 2,814,533 + -0.6 2,814,533 + +0.1 2,814,533 - -0.2 2,814,559 + Dsui_2659 0.19 -0.0 2,814,579 + Dsui_2659 0.29 -0.3 2,814,587 - -0.2 2,814,587 - +0.8 2,814,590 + Dsui_2659 0.34 -0.3 2,814,677 + Dsui_2659 0.77 +0.1 2,814,682 + Dsui_2659 0.79 +0.3 2,814,682 + Dsui_2659 0.79 +0.2 2,814,682 + Dsui_2659 0.79 +0.0 2,814,699 + Dsui_2659 0.88 +0.2 2,814,716 - -0.2 2,814,718 + -0.3 2,814,718 + -0.1 2,814,726 - +0.8 2,814,816 + -1.5 2,814,821 + +0.8 2,814,824 - -0.2 2,814,829 - +0.2 2,814,830 - -0.3 2,814,843 - +0.2 2,814,851 - +0.4 2,815,330 + -0.2 2,815,848 - -0.4 2,815,848 - +0.1 2,815,929 + +0.8 2,815,929 + -2.0 2,815,988 + +0.8 2,816,006 - -0.8 2,816,065 - Dsui_2662 0.16 -0.8 2,816,067 + +0.8 2,816,075 - Dsui_2662 0.17 -0.2 2,816,077 - +0.8 2,816,160 + Dsui_2662 0.27 -3.1 2,816,179 - +0.8 2,816,209 + +2.8 2,816,217 - Dsui_2662 0.33 +0.8 2,816,217 - +0.8
Or see this region's nucleotide sequence