Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2647 and Dsui_2648 are separated by 17 nucleotides Dsui_2648 and Dsui_2649 are separated by 6 nucleotides
Dsui_2647: Dsui_2647 - subtilisin-like serine protease, at 2,799,446 to 2,801,671
_2647
Dsui_2648: Dsui_2648 - site-specific recombinase XerD, at 2,801,689 to 2,802,972
_2648
Dsui_2649: Dsui_2649 - transposase, TnpA family, at 2,802,979 to 2,805,981
_2649
Position (kb)
2801
2802
2803 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2800.710 kb on + strand, within Dsui_2647 at 2800.807 kb on - strand, within Dsui_2647 at 2800.995 kb on + strand, within Dsui_2647 at 2800.998 kb on - strand, within Dsui_2647 at 2801.030 kb on + strand, within Dsui_2647 at 2801.183 kb on + strand, within Dsui_2647 at 2801.314 kb on + strand, within Dsui_2647 at 2801.334 kb on - strand, within Dsui_2647 at 2801.416 kb on - strand, within Dsui_2647 at 2801.476 kb on + strand at 2801.488 kb on + strand at 2801.550 kb on + strand at 2801.550 kb on + strand at 2801.603 kb on + strand at 2801.610 kb on + strand at 2801.667 kb on + strand at 2801.709 kb on + strand at 2801.858 kb on + strand, within Dsui_2648 at 2801.860 kb on + strand, within Dsui_2648 at 2801.946 kb on + strand, within Dsui_2648 at 2801.954 kb on - strand, within Dsui_2648 at 2802.028 kb on - strand, within Dsui_2648 at 2802.151 kb on - strand at 2802.204 kb on - strand, within Dsui_2648 at 2802.260 kb on + strand, within Dsui_2648 at 2802.269 kb on + strand, within Dsui_2648 at 2802.295 kb on + strand, within Dsui_2648 at 2802.305 kb on + strand, within Dsui_2648 at 2802.313 kb on - strand, within Dsui_2648 at 2802.314 kb on + strand, within Dsui_2648 at 2802.428 kb on + strand, within Dsui_2648 at 2802.441 kb on - strand, within Dsui_2648 at 2802.453 kb on + strand, within Dsui_2648 at 2802.499 kb on - strand, within Dsui_2648 at 2802.569 kb on + strand, within Dsui_2648 at 2802.579 kb on + strand, within Dsui_2648 at 2802.587 kb on - strand, within Dsui_2648 at 2802.646 kb on + strand, within Dsui_2648 at 2802.672 kb on + strand, within Dsui_2648 at 2802.720 kb on + strand, within Dsui_2648 at 2802.786 kb on + strand, within Dsui_2648 at 2802.786 kb on + strand, within Dsui_2648 at 2802.794 kb on - strand, within Dsui_2648 at 2802.798 kb on + strand, within Dsui_2648 at 2802.870 kb on + strand at 2802.870 kb on + strand at 2802.878 kb on - strand at 2802.878 kb on - strand at 2802.878 kb on - strand at 2802.878 kb on - strand at 2802.878 kb on - strand at 2802.938 kb on + strand at 2802.938 kb on + strand at 2803.023 kb on + strand at 2803.047 kb on + strand at 2803.055 kb on - strand at 2803.167 kb on + strand at 2803.167 kb on + strand at 2803.167 kb on + strand at 2803.167 kb on + strand at 2803.175 kb on - strand at 2803.259 kb on + strand at 2803.279 kb on - strand at 2803.309 kb on - strand, within Dsui_2649 at 2803.340 kb on + strand, within Dsui_2649 at 2803.381 kb on - strand, within Dsui_2649 at 2803.438 kb on + strand, within Dsui_2649 at 2803.536 kb on + strand, within Dsui_2649 at 2803.543 kb on + strand, within Dsui_2649 at 2803.592 kb on + strand, within Dsui_2649 at 2803.667 kb on + strand, within Dsui_2649 at 2803.677 kb on - strand, within Dsui_2649 at 2803.726 kb on + strand, within Dsui_2649 at 2803.739 kb on - strand, within Dsui_2649 at 2803.796 kb on - strand at 2803.903 kb on - strand, within Dsui_2649 at 2803.906 kb on + strand, within Dsui_2649 at 2803.945 kb on - strand, within Dsui_2649
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,800,710 + Dsui_2647 0.57 +0.8 2,800,807 - Dsui_2647 0.61 +0.8 2,800,995 + Dsui_2647 0.70 -0.0 2,800,998 - Dsui_2647 0.70 -0.8 2,801,030 + Dsui_2647 0.71 -0.4 2,801,183 + Dsui_2647 0.78 -0.8 2,801,314 + Dsui_2647 0.84 -1.6 2,801,334 - Dsui_2647 0.85 -0.2 2,801,416 - Dsui_2647 0.88 -0.2 2,801,476 + +0.8 2,801,488 + +0.2 2,801,550 + -0.2 2,801,550 + +0.8 2,801,603 + -0.2 2,801,610 + -0.1 2,801,667 + -1.6 2,801,709 + -0.1 2,801,858 + Dsui_2648 0.13 -0.2 2,801,860 + Dsui_2648 0.13 -0.2 2,801,946 + Dsui_2648 0.20 -0.2 2,801,954 - Dsui_2648 0.21 -1.6 2,802,028 - Dsui_2648 0.26 +1.8 2,802,151 - +0.8 2,802,204 - Dsui_2648 0.40 -0.2 2,802,260 + Dsui_2648 0.44 -0.2 2,802,269 + Dsui_2648 0.45 -1.2 2,802,295 + Dsui_2648 0.47 +0.8 2,802,305 + Dsui_2648 0.48 +0.8 2,802,313 - Dsui_2648 0.49 +0.8 2,802,314 + Dsui_2648 0.49 -1.8 2,802,428 + Dsui_2648 0.58 +0.8 2,802,441 - Dsui_2648 0.59 +0.8 2,802,453 + Dsui_2648 0.60 +0.4 2,802,499 - Dsui_2648 0.63 -1.2 2,802,569 + Dsui_2648 0.69 -2.2 2,802,579 + Dsui_2648 0.69 -0.2 2,802,587 - Dsui_2648 0.70 +0.8 2,802,646 + Dsui_2648 0.75 +0.8 2,802,672 + Dsui_2648 0.77 -1.2 2,802,720 + Dsui_2648 0.80 +0.8 2,802,786 + Dsui_2648 0.85 +0.8 2,802,786 + Dsui_2648 0.85 -2.9 2,802,794 - Dsui_2648 0.86 +0.8 2,802,798 + Dsui_2648 0.86 -0.3 2,802,870 + +0.8 2,802,870 + +0.8 2,802,878 - +0.8 2,802,878 - +0.8 2,802,878 - -0.8 2,802,878 - -0.2 2,802,878 - +0.8 2,802,938 + +0.8 2,802,938 + +0.8 2,803,023 + +0.8 2,803,047 + +0.8 2,803,055 - +0.8 2,803,167 + -1.6 2,803,167 + +0.8 2,803,167 + -0.8 2,803,167 + -0.2 2,803,175 - -0.2 2,803,259 + -1.8 2,803,279 - -0.2 2,803,309 - Dsui_2649 0.11 -0.2 2,803,340 + Dsui_2649 0.12 +0.8 2,803,381 - Dsui_2649 0.13 -0.8 2,803,438 + Dsui_2649 0.15 -0.2 2,803,536 + Dsui_2649 0.19 -0.2 2,803,543 + Dsui_2649 0.19 +0.8 2,803,592 + Dsui_2649 0.20 -0.2 2,803,667 + Dsui_2649 0.23 +0.8 2,803,677 - Dsui_2649 0.23 -0.2 2,803,726 + Dsui_2649 0.25 +0.8 2,803,739 - Dsui_2649 0.25 +0.8 2,803,796 - +0.8 2,803,903 - Dsui_2649 0.31 +0.8 2,803,906 + Dsui_2649 0.31 +0.8 2,803,945 - Dsui_2649 0.32 -0.8
Or see this region's nucleotide sequence