Strain Fitness in Dechlorosoma suillum PS around Dsui_2636

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2635 and Dsui_2636 are separated by 11 nucleotidesDsui_2636 and Dsui_2637 overlap by 4 nucleotides Dsui_2635: Dsui_2635 - heavy metal efflux pump, cobalt-zinc-cadmium, at 2,785,081 to 2,788,215 _2635 Dsui_2636: Dsui_2636 - RND family efflux transporter, MFP subunit, at 2,788,227 to 2,789,816 _2636 Dsui_2637: Dsui_2637 - outer membrane protein, at 2,789,813 to 2,791,084 _2637 Position (kb) 2788 2789 2790Strain fitness (log2 ratio) -3 -2 -1 0 1at 2787.247 kb on + strand, within Dsui_2635at 2787.247 kb on + strand, within Dsui_2635at 2787.247 kb on + strand, within Dsui_2635at 2787.247 kb on + strand, within Dsui_2635at 2787.247 kb on + strand, within Dsui_2635at 2787.255 kb on - strand, within Dsui_2635at 2787.255 kb on - strand, within Dsui_2635at 2787.255 kb on - strand, within Dsui_2635at 2787.280 kb on - strand, within Dsui_2635at 2787.397 kb on + strand, within Dsui_2635at 2787.453 kb on + strand, within Dsui_2635at 2787.565 kb on + strand, within Dsui_2635at 2787.739 kb on + strand, within Dsui_2635at 2787.767 kb on + strand, within Dsui_2635at 2787.813 kb on - strand, within Dsui_2635at 2787.845 kb on + strand, within Dsui_2635at 2787.936 kb on + strandat 2787.967 kb on + strandat 2788.078 kb on - strandat 2788.250 kb on - strandat 2788.621 kb on + strand, within Dsui_2636at 2788.707 kb on - strand, within Dsui_2636at 2788.780 kb on + strandat 2788.936 kb on - strand, within Dsui_2636at 2788.962 kb on + strand, within Dsui_2636at 2788.963 kb on + strand, within Dsui_2636at 2788.971 kb on - strand, within Dsui_2636at 2788.971 kb on - strand, within Dsui_2636at 2788.971 kb on - strand, within Dsui_2636at 2788.971 kb on - strand, within Dsui_2636at 2788.971 kb on - strand, within Dsui_2636at 2788.983 kb on - strand, within Dsui_2636at 2789.152 kb on + strand, within Dsui_2636at 2789.160 kb on - strand, within Dsui_2636at 2789.160 kb on - strand, within Dsui_2636at 2789.314 kb on - strand, within Dsui_2636at 2789.336 kb on + strand, within Dsui_2636at 2789.494 kb on - strand, within Dsui_2636at 2789.569 kb on + strand, within Dsui_2636at 2789.571 kb on + strand, within Dsui_2636at 2789.577 kb on - strand, within Dsui_2636at 2789.579 kb on - strand, within Dsui_2636at 2789.634 kb on - strand, within Dsui_2636at 2789.639 kb on - strand, within Dsui_2636at 2789.798 kb on + strandat 2789.801 kb on - strandat 2789.806 kb on + strandat 2789.806 kb on - strandat 2789.996 kb on - strand, within Dsui_2637at 2789.996 kb on - strand, within Dsui_2637at 2789.996 kb on - strand, within Dsui_2637at 2790.119 kb on - strand, within Dsui_2637at 2790.166 kb on - strand, within Dsui_2637at 2790.199 kb on + strand, within Dsui_2637at 2790.220 kb on + strandat 2790.225 kb on + strand, within Dsui_2637at 2790.228 kb on - strand, within Dsui_2637at 2790.228 kb on - strand, within Dsui_2637at 2790.228 kb on - strand, within Dsui_2637at 2790.327 kb on - strand, within Dsui_2637at 2790.327 kb on - strand, within Dsui_2637at 2790.327 kb on - strand, within Dsui_2637at 2790.365 kb on - strand, within Dsui_2637at 2790.365 kb on - strand, within Dsui_2637at 2790.519 kb on - strand, within Dsui_2637at 2790.647 kb on - strand, within Dsui_2637at 2790.695 kb on - strand, within Dsui_2637at 2790.697 kb on + strand, within Dsui_2637at 2790.705 kb on - strand, within Dsui_2637

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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2,787,247 + Dsui_2635 0.69 +0.8
2,787,247 + Dsui_2635 0.69 -0.2
2,787,247 + Dsui_2635 0.69 -1.2
2,787,247 + Dsui_2635 0.69 -0.2
2,787,247 + Dsui_2635 0.69 +0.8
2,787,255 - Dsui_2635 0.69 +0.8
2,787,255 - Dsui_2635 0.69 +0.8
2,787,255 - Dsui_2635 0.69 -1.2
2,787,280 - Dsui_2635 0.70 -0.2
2,787,397 + Dsui_2635 0.74 -0.2
2,787,453 + Dsui_2635 0.76 -0.2
2,787,565 + Dsui_2635 0.79 +0.8
2,787,739 + Dsui_2635 0.85 +0.8
2,787,767 + Dsui_2635 0.86 +0.8
2,787,813 - Dsui_2635 0.87 -0.2
2,787,845 + Dsui_2635 0.88 +0.8
2,787,936 + +0.8
2,787,967 + +0.8
2,788,078 - -0.8
2,788,250 - +0.8
2,788,621 + Dsui_2636 0.25 +0.8
2,788,707 - Dsui_2636 0.30 -0.8
2,788,780 + +0.8
2,788,936 - Dsui_2636 0.45 -0.2
2,788,962 + Dsui_2636 0.46 +0.8
2,788,963 + Dsui_2636 0.46 +0.8
2,788,971 - Dsui_2636 0.47 -0.8
2,788,971 - Dsui_2636 0.47 -0.2
2,788,971 - Dsui_2636 0.47 -1.6
2,788,971 - Dsui_2636 0.47 -0.8
2,788,971 - Dsui_2636 0.47 -0.2
2,788,983 - Dsui_2636 0.48 -1.8
2,789,152 + Dsui_2636 0.58 -0.2
2,789,160 - Dsui_2636 0.59 -0.8
2,789,160 - Dsui_2636 0.59 +0.8
2,789,314 - Dsui_2636 0.68 -3.1
2,789,336 + Dsui_2636 0.70 +0.8
2,789,494 - Dsui_2636 0.80 -0.2
2,789,569 + Dsui_2636 0.84 +0.8
2,789,571 + Dsui_2636 0.85 +0.8
2,789,577 - Dsui_2636 0.85 -2.2
2,789,579 - Dsui_2636 0.85 +0.8
2,789,634 - Dsui_2636 0.88 -1.2
2,789,639 - Dsui_2636 0.89 +0.8
2,789,798 + +0.8
2,789,801 - -0.2
2,789,806 + -0.8
2,789,806 - -1.2
2,789,996 - Dsui_2637 0.14 +0.8
2,789,996 - Dsui_2637 0.14 +0.8
2,789,996 - Dsui_2637 0.14 -1.6
2,790,119 - Dsui_2637 0.24 -0.2
2,790,166 - Dsui_2637 0.28 -0.2
2,790,199 + Dsui_2637 0.30 -2.2
2,790,220 + +0.8
2,790,225 + Dsui_2637 0.32 -0.2
2,790,228 - Dsui_2637 0.33 -1.6
2,790,228 - Dsui_2637 0.33 -0.2
2,790,228 - Dsui_2637 0.33 -2.8
2,790,327 - Dsui_2637 0.40 -0.2
2,790,327 - Dsui_2637 0.40 -0.2
2,790,327 - Dsui_2637 0.40 -0.2
2,790,365 - Dsui_2637 0.43 +0.8
2,790,365 - Dsui_2637 0.43 -0.8
2,790,519 - Dsui_2637 0.56 -0.8
2,790,647 - Dsui_2637 0.66 +0.8
2,790,695 - Dsui_2637 0.69 -0.8
2,790,697 + Dsui_2637 0.69 -1.2
2,790,705 - Dsui_2637 0.70 -1.6

Or see this region's nucleotide sequence