Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2610 and Dsui_2611 are separated by 7 nucleotides Dsui_2611 and Dsui_2612 overlap by 4 nucleotides Dsui_2612 and Dsui_2613 overlap by 4 nucleotides Dsui_2613 and Dsui_2614 are separated by 48 nucleotides Dsui_2614 and Dsui_2615 overlap by 4 nucleotides
Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330
_2610
Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667
_2611
Dsui_2612: Dsui_2612 - hypothetical protein, at 2,765,664 to 2,766,197
_2612
Dsui_2613: Dsui_2613 - integrating conjugative element protein, PFL_4669 family, at 2,766,194 to 2,767,207
_2613
Dsui_2614: Dsui_2614 - hypothetical protein, at 2,767,256 to 2,768,056
_2614
Dsui_2615: Dsui_2615 - hypothetical protein, at 2,768,053 to 2,769,579
_2615
Position (kb)
2766
2767
2768 Strain fitness (log2 ratio)
-2
-1
0
1 at 2765.195 kb on + strand, within Dsui_2610 at 2765.254 kb on - strand, within Dsui_2610 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.427 kb on + strand at 2765.474 kb on - strand, within Dsui_2611 at 2765.564 kb on - strand, within Dsui_2611 at 2765.638 kb on - strand at 2765.638 kb on - strand at 2765.670 kb on + strand at 2765.736 kb on - strand, within Dsui_2612 at 2765.792 kb on - strand at 2765.792 kb on - strand, within Dsui_2612 at 2765.904 kb on - strand, within Dsui_2612 at 2765.991 kb on + strand, within Dsui_2612 at 2766.118 kb on + strand, within Dsui_2612 at 2766.165 kb on - strand at 2766.169 kb on + strand at 2766.276 kb on + strand at 2766.415 kb on + strand, within Dsui_2613 at 2766.423 kb on - strand, within Dsui_2613 at 2766.423 kb on - strand, within Dsui_2613 at 2766.423 kb on - strand, within Dsui_2613 at 2766.512 kb on + strand at 2766.519 kb on - strand, within Dsui_2613 at 2766.563 kb on - strand, within Dsui_2613 at 2766.691 kb on - strand, within Dsui_2613 at 2766.734 kb on - strand, within Dsui_2613 at 2766.797 kb on - strand, within Dsui_2613 at 2766.803 kb on - strand, within Dsui_2613 at 2766.927 kb on + strand, within Dsui_2613 at 2767.067 kb on + strand at 2767.144 kb on + strand at 2767.262 kb on - strand at 2767.597 kb on + strand, within Dsui_2614 at 2767.597 kb on + strand, within Dsui_2614 at 2767.606 kb on - strand, within Dsui_2614 at 2767.716 kb on + strand, within Dsui_2614 at 2767.764 kb on - strand, within Dsui_2614 at 2767.948 kb on - strand, within Dsui_2614 at 2767.985 kb on + strand at 2768.093 kb on + strand at 2768.185 kb on - strand at 2768.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,765,195 + Dsui_2610 0.63 +0.8 2,765,254 - Dsui_2610 0.79 -0.2 2,765,425 - Dsui_2611 0.26 +0.8 2,765,425 - Dsui_2611 0.26 +0.8 2,765,425 - Dsui_2611 0.26 +0.8 2,765,427 + +0.8 2,765,474 - Dsui_2611 0.41 +0.8 2,765,564 - Dsui_2611 0.68 +0.8 2,765,638 - +0.8 2,765,638 - +0.8 2,765,670 + -1.2 2,765,736 - Dsui_2612 0.13 +0.7 2,765,792 - -0.3 2,765,792 - Dsui_2612 0.24 -0.8 2,765,904 - Dsui_2612 0.45 +0.7 2,765,991 + Dsui_2612 0.61 -0.8 2,766,118 + Dsui_2612 0.85 -0.8 2,766,165 - -0.3 2,766,169 + -0.8 2,766,276 + -0.3 2,766,415 + Dsui_2613 0.22 -0.8 2,766,423 - Dsui_2613 0.23 -0.2 2,766,423 - Dsui_2613 0.23 -1.0 2,766,423 - Dsui_2613 0.23 -0.8 2,766,512 + +0.8 2,766,519 - Dsui_2613 0.32 +0.8 2,766,563 - Dsui_2613 0.36 -0.2 2,766,691 - Dsui_2613 0.49 +0.8 2,766,734 - Dsui_2613 0.53 +0.8 2,766,797 - Dsui_2613 0.59 -0.2 2,766,803 - Dsui_2613 0.60 +0.8 2,766,927 + Dsui_2613 0.72 -0.2 2,767,067 + +0.8 2,767,144 + +0.8 2,767,262 - +0.7 2,767,597 + Dsui_2614 0.43 +0.7 2,767,597 + Dsui_2614 0.43 +0.7 2,767,606 - Dsui_2614 0.44 -1.3 2,767,716 + Dsui_2614 0.57 -2.3 2,767,764 - Dsui_2614 0.63 +0.7 2,767,948 - Dsui_2614 0.86 +0.7 2,767,985 + +0.2 2,768,093 + +0.7 2,768,185 - -0.8 2,768,187 + -0.8
Or see this region's nucleotide sequence