Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2455 and Dsui_2456 overlap by 14 nucleotides Dsui_2456 and Dsui_2457 are separated by 56 nucleotides Dsui_2457 and Dsui_2458 are separated by 11 nucleotides Dsui_2458 and Dsui_2459 are separated by 16 nucleotides
Dsui_2455: Dsui_2455 - periplasmic serine protease, Do/DeqQ family, at 2,613,296 to 2,614,741
_2455
Dsui_2456: Dsui_2456 - Glutaredoxin-like domain (DUF836), at 2,614,728 to 2,615,000
_2456
Dsui_2457: Dsui_2457 - GTP-binding protein LepA, at 2,615,057 to 2,616,850
_2457
Dsui_2458: Dsui_2458 - signal peptidase I, at 2,616,862 to 2,617,650
_2458
Dsui_2459: Dsui_2459 - hypothetical protein, at 2,617,667 to 2,618,038
_2459
Position (kb)
2615
2616
2617 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2614.159 kb on + strand, within Dsui_2455 at 2614.167 kb on - strand at 2614.231 kb on + strand, within Dsui_2455 at 2614.248 kb on + strand, within Dsui_2455 at 2614.275 kb on + strand, within Dsui_2455 at 2614.314 kb on + strand, within Dsui_2455 at 2614.393 kb on + strand, within Dsui_2455 at 2614.460 kb on - strand at 2614.713 kb on + strand at 2614.721 kb on + strand at 2614.721 kb on - strand at 2614.723 kb on + strand at 2614.754 kb on + strand at 2614.762 kb on - strand, within Dsui_2456 at 2614.762 kb on - strand, within Dsui_2456 at 2614.764 kb on + strand, within Dsui_2456 at 2614.787 kb on + strand, within Dsui_2456 at 2614.789 kb on + strand, within Dsui_2456 at 2614.963 kb on + strand, within Dsui_2456 at 2614.963 kb on + strand, within Dsui_2456 at 2615.031 kb on + strand at 2615.055 kb on + strand at 2615.134 kb on + strand at 2615.174 kb on + strand at 2615.271 kb on + strand, within Dsui_2457 at 2615.384 kb on + strand, within Dsui_2457 at 2615.424 kb on + strand, within Dsui_2457 at 2615.704 kb on + strand, within Dsui_2457 at 2615.731 kb on + strand, within Dsui_2457 at 2615.880 kb on + strand, within Dsui_2457 at 2615.955 kb on + strand, within Dsui_2457 at 2616.309 kb on + strand, within Dsui_2457 at 2616.309 kb on + strand, within Dsui_2457 at 2616.309 kb on + strand, within Dsui_2457 at 2616.379 kb on + strand, within Dsui_2457 at 2616.427 kb on + strand, within Dsui_2457 at 2616.529 kb on + strand, within Dsui_2457 at 2617.649 kb on + strand at 2617.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,614,159 + Dsui_2455 0.60 -0.5 2,614,167 - +0.8 2,614,231 + Dsui_2455 0.65 -0.7 2,614,248 + Dsui_2455 0.66 -0.4 2,614,275 + Dsui_2455 0.68 +0.6 2,614,314 + Dsui_2455 0.70 -0.3 2,614,393 + Dsui_2455 0.76 -0.5 2,614,460 - +0.8 2,614,713 + -0.2 2,614,721 + -0.2 2,614,721 - -0.8 2,614,723 + -0.0 2,614,754 + +0.4 2,614,762 - Dsui_2456 0.12 +0.8 2,614,762 - Dsui_2456 0.12 -2.7 2,614,764 + Dsui_2456 0.13 -0.4 2,614,787 + Dsui_2456 0.22 +0.8 2,614,789 + Dsui_2456 0.22 -0.5 2,614,963 + Dsui_2456 0.86 -0.1 2,614,963 + Dsui_2456 0.86 -0.2 2,615,031 + -1.5 2,615,055 + -1.0 2,615,134 + -1.5 2,615,174 + -3.1 2,615,271 + Dsui_2457 0.12 -2.7 2,615,384 + Dsui_2457 0.18 -3.3 2,615,424 + Dsui_2457 0.20 -3.7 2,615,704 + Dsui_2457 0.36 -4.6 2,615,731 + Dsui_2457 0.38 -2.5 2,615,880 + Dsui_2457 0.46 -4.4 2,615,955 + Dsui_2457 0.50 -4.1 2,616,309 + Dsui_2457 0.70 -2.8 2,616,309 + Dsui_2457 0.70 -3.0 2,616,309 + Dsui_2457 0.70 -1.9 2,616,379 + Dsui_2457 0.74 -4.0 2,616,427 + Dsui_2457 0.76 -4.1 2,616,529 + Dsui_2457 0.82 -5.0 2,617,649 + -0.9 2,617,670 - +0.8
Or see this region's nucleotide sequence