Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2452 and Dsui_2453 are separated by 282 nucleotides Dsui_2453 and Dsui_2454 are separated by 112 nucleotides Dsui_2454 and Dsui_2455 are separated by 30 nucleotides
Dsui_2452: Dsui_2452 - L-aspartate oxidase, at 2,610,262 to 2,611,839
_2452
Dsui_2453: Dsui_2453 - RNA polymerase sigma factor RpoE, at 2,612,122 to 2,612,721
_2453
Dsui_2454: Dsui_2454 - Positive regulator of sigma E activity, at 2,612,834 to 2,613,265
_2454
Dsui_2455: Dsui_2455 - periplasmic serine protease, Do/DeqQ family, at 2,613,296 to 2,614,741
_2455
Position (kb)
2612
2613
2614 Strain fitness (log2 ratio)
-1
0
1
2 at 2611.854 kb on - strand at 2611.885 kb on - strand at 2612.091 kb on + strand at 2612.091 kb on + strand at 2612.091 kb on + strand at 2612.092 kb on + strand at 2612.786 kb on + strand at 2612.786 kb on + strand at 2612.818 kb on + strand at 2612.916 kb on + strand, within Dsui_2454 at 2612.916 kb on + strand, within Dsui_2454 at 2612.916 kb on + strand, within Dsui_2454 at 2613.137 kb on + strand, within Dsui_2454 at 2613.211 kb on + strand, within Dsui_2454 at 2613.211 kb on + strand, within Dsui_2454 at 2613.245 kb on + strand at 2613.274 kb on + strand at 2613.402 kb on + strand at 2613.402 kb on + strand at 2613.426 kb on + strand at 2613.437 kb on - strand at 2613.456 kb on - strand, within Dsui_2455 at 2613.478 kb on + strand, within Dsui_2455 at 2613.617 kb on + strand, within Dsui_2455 at 2613.617 kb on + strand, within Dsui_2455 at 2613.636 kb on + strand, within Dsui_2455 at 2613.705 kb on + strand, within Dsui_2455 at 2613.733 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.794 kb on + strand, within Dsui_2455 at 2613.902 kb on + strand, within Dsui_2455 at 2613.903 kb on + strand, within Dsui_2455 at 2613.907 kb on + strand, within Dsui_2455 at 2614.159 kb on + strand, within Dsui_2455 at 2614.167 kb on - strand at 2614.231 kb on + strand, within Dsui_2455 at 2614.248 kb on + strand, within Dsui_2455
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,611,854 - -0.7 2,611,885 - -0.8 2,612,091 + +0.1 2,612,091 + -0.2 2,612,091 + -0.2 2,612,092 + -0.3 2,612,786 + -0.8 2,612,786 + -0.1 2,612,818 + -0.7 2,612,916 + Dsui_2454 0.19 +1.8 2,612,916 + Dsui_2454 0.19 +1.6 2,612,916 + Dsui_2454 0.19 +1.6 2,613,137 + Dsui_2454 0.70 +1.5 2,613,211 + Dsui_2454 0.87 +0.5 2,613,211 + Dsui_2454 0.87 +0.7 2,613,245 + -0.0 2,613,274 + +0.1 2,613,402 + -0.0 2,613,402 + -0.6 2,613,426 + -0.3 2,613,437 - +0.8 2,613,456 - Dsui_2455 0.11 -1.2 2,613,478 + Dsui_2455 0.13 -0.7 2,613,617 + Dsui_2455 0.22 -0.5 2,613,617 + Dsui_2455 0.22 +0.4 2,613,636 + Dsui_2455 0.24 -0.1 2,613,705 + Dsui_2455 0.28 -0.7 2,613,733 + Dsui_2455 0.30 -0.3 2,613,792 + Dsui_2455 0.34 -0.3 2,613,792 + Dsui_2455 0.34 -0.1 2,613,792 + Dsui_2455 0.34 -0.7 2,613,792 + Dsui_2455 0.34 +0.9 2,613,794 + Dsui_2455 0.34 -0.5 2,613,902 + Dsui_2455 0.42 -0.7 2,613,903 + Dsui_2455 0.42 -0.6 2,613,907 + Dsui_2455 0.42 -0.4 2,614,159 + Dsui_2455 0.60 -0.5 2,614,167 - +0.8 2,614,231 + Dsui_2455 0.65 -0.7 2,614,248 + Dsui_2455 0.66 -0.4
Or see this region's nucleotide sequence