Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2437 and Dsui_2438 overlap by 17 nucleotides Dsui_2438 and Dsui_2439 overlap by 22 nucleotides Dsui_2439 and Dsui_2440 are separated by 6 nucleotides
Dsui_2437: Dsui_2437 - pseudouridine synthase, RluA family, at 2,599,184 to 2,600,179
_2437
Dsui_2438: Dsui_2438 - haloacid dehalogenase superfamily enzyme, subfamily IA, at 2,600,163 to 2,600,819
_2438
Dsui_2439: Dsui_2439 - ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase, at 2,600,798 to 2,601,148
_2439
Dsui_2440: Dsui_2440 - ClpP class periplasmic serine protease, at 2,601,155 to 2,602,141
_2440
Position (kb)
2600
2601 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2599.221 kb on + strand at 2599.273 kb on + strand at 2599.317 kb on + strand, within Dsui_2437 at 2599.317 kb on + strand, within Dsui_2437 at 2599.319 kb on + strand, within Dsui_2437 at 2599.629 kb on + strand, within Dsui_2437 at 2599.637 kb on - strand, within Dsui_2437 at 2599.672 kb on - strand at 2599.752 kb on + strand, within Dsui_2437 at 2599.959 kb on + strand, within Dsui_2437 at 2600.021 kb on + strand, within Dsui_2437 at 2600.031 kb on - strand at 2600.046 kb on + strand, within Dsui_2437 at 2600.069 kb on + strand, within Dsui_2437 at 2600.099 kb on - strand at 2600.108 kb on + strand at 2600.114 kb on + strand at 2600.114 kb on + strand at 2600.210 kb on + strand at 2600.308 kb on + strand, within Dsui_2438 at 2600.523 kb on + strand, within Dsui_2438 at 2600.523 kb on + strand, within Dsui_2438 at 2600.649 kb on + strand, within Dsui_2438 at 2600.692 kb on + strand, within Dsui_2438 at 2600.847 kb on - strand at 2600.919 kb on + strand, within Dsui_2439 at 2600.924 kb on + strand, within Dsui_2439 at 2600.997 kb on + strand, within Dsui_2439 at 2601.006 kb on - strand, within Dsui_2439 at 2601.010 kb on - strand at 2601.161 kb on + strand at 2601.212 kb on + strand at 2601.299 kb on - strand, within Dsui_2440 at 2601.326 kb on + strand, within Dsui_2440 at 2601.427 kb on + strand, within Dsui_2440 at 2601.435 kb on - strand, within Dsui_2440 at 2601.464 kb on + strand, within Dsui_2440 at 2601.489 kb on + strand, within Dsui_2440 at 2601.499 kb on + strand, within Dsui_2440 at 2601.595 kb on + strand, within Dsui_2440 at 2601.735 kb on + strand, within Dsui_2440 at 2601.735 kb on + strand, within Dsui_2440 at 2601.746 kb on + strand, within Dsui_2440
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,599,221 + +0.9 2,599,273 + +1.8 2,599,317 + Dsui_2437 0.13 +0.1 2,599,317 + Dsui_2437 0.13 +2.2 2,599,319 + Dsui_2437 0.14 +1.7 2,599,629 + Dsui_2437 0.45 +2.9 2,599,637 - Dsui_2437 0.45 +0.8 2,599,672 - -0.2 2,599,752 + Dsui_2437 0.57 +1.4 2,599,959 + Dsui_2437 0.78 +2.3 2,600,021 + Dsui_2437 0.84 +1.6 2,600,031 - +0.8 2,600,046 + Dsui_2437 0.87 +1.5 2,600,069 + Dsui_2437 0.89 +1.9 2,600,099 - -0.2 2,600,108 + +1.9 2,600,114 + +1.2 2,600,114 + +1.1 2,600,210 + -0.3 2,600,308 + Dsui_2438 0.22 -0.5 2,600,523 + Dsui_2438 0.55 +0.2 2,600,523 + Dsui_2438 0.55 -0.3 2,600,649 + Dsui_2438 0.74 +0.6 2,600,692 + Dsui_2438 0.81 -0.3 2,600,847 - +0.8 2,600,919 + Dsui_2439 0.34 +0.1 2,600,924 + Dsui_2439 0.36 -0.3 2,600,997 + Dsui_2439 0.57 -0.1 2,601,006 - Dsui_2439 0.59 -0.8 2,601,010 - +0.8 2,601,161 + -0.4 2,601,212 + +0.8 2,601,299 - Dsui_2440 0.15 +0.8 2,601,326 + Dsui_2440 0.17 +0.3 2,601,427 + Dsui_2440 0.28 -0.6 2,601,435 - Dsui_2440 0.28 -0.2 2,601,464 + Dsui_2440 0.31 -0.8 2,601,489 + Dsui_2440 0.34 -1.7 2,601,499 + Dsui_2440 0.35 -1.7 2,601,595 + Dsui_2440 0.45 -0.6 2,601,735 + Dsui_2440 0.59 -0.6 2,601,735 + Dsui_2440 0.59 -0.7 2,601,746 + Dsui_2440 0.60 -0.5
Or see this region's nucleotide sequence