Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2434 and Dsui_2435 overlap by 4 nucleotides Dsui_2435 and Dsui_2436 are separated by 88 nucleotides Dsui_2436 and Dsui_2437 are separated by 444 nucleotides
Dsui_2434: Dsui_2434 - excinuclease ABC, B subunit, at 2,593,292 to 2,595,364
_2434
Dsui_2435: Dsui_2435 - protein-tyrosine-phosphatase, at 2,595,361 to 2,595,888
_2435
Dsui_2436: Dsui_2436 - ribonuclease, Rne/Rng family, at 2,595,977 to 2,598,739
_2436
Dsui_2437: Dsui_2437 - pseudouridine synthase, RluA family, at 2,599,184 to 2,600,179
_2437
Position (kb)
2595
2596
2597
2598
2599 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2595.157 kb on + strand at 2595.161 kb on + strand at 2595.225 kb on - strand at 2595.260 kb on + strand at 2595.266 kb on + strand at 2595.312 kb on + strand at 2595.351 kb on + strand at 2595.361 kb on - strand at 2595.363 kb on + strand at 2595.388 kb on + strand at 2595.396 kb on - strand at 2595.518 kb on + strand, within Dsui_2435 at 2595.556 kb on - strand, within Dsui_2435 at 2595.556 kb on - strand, within Dsui_2435 at 2595.620 kb on + strand, within Dsui_2435 at 2595.680 kb on + strand, within Dsui_2435 at 2595.680 kb on + strand, within Dsui_2435 at 2595.748 kb on - strand, within Dsui_2435 at 2595.769 kb on + strand, within Dsui_2435 at 2595.779 kb on + strand, within Dsui_2435 at 2595.859 kb on + strand at 2595.865 kb on + strand at 2595.882 kb on + strand at 2595.936 kb on + strand at 2595.944 kb on + strand at 2595.968 kb on + strand at 2596.027 kb on - strand at 2596.074 kb on + strand at 2596.098 kb on - strand at 2596.162 kb on - strand at 2596.206 kb on - strand at 2596.234 kb on - strand at 2596.253 kb on - strand at 2596.271 kb on - strand, within Dsui_2436 at 2596.453 kb on + strand, within Dsui_2436 at 2596.484 kb on - strand, within Dsui_2436 at 2596.588 kb on - strand, within Dsui_2436 at 2596.637 kb on + strand, within Dsui_2436 at 2596.662 kb on + strand at 2596.718 kb on - strand, within Dsui_2436 at 2596.754 kb on - strand, within Dsui_2436 at 2596.754 kb on - strand, within Dsui_2436 at 2596.769 kb on - strand, within Dsui_2436 at 2596.992 kb on - strand, within Dsui_2436 at 2597.201 kb on - strand, within Dsui_2436 at 2598.781 kb on - strand at 2598.987 kb on + strand at 2598.995 kb on - strand at 2598.995 kb on - strand at 2598.995 kb on - strand at 2598.995 kb on - strand at 2598.995 kb on - strand at 2598.997 kb on + strand at 2599.029 kb on - strand at 2599.046 kb on - strand at 2599.056 kb on - strand at 2599.062 kb on - strand at 2599.138 kb on + strand at 2599.144 kb on + strand at 2599.144 kb on + strand at 2599.152 kb on - strand at 2599.221 kb on + strand at 2599.273 kb on + strand at 2599.317 kb on + strand, within Dsui_2437 at 2599.317 kb on + strand, within Dsui_2437 at 2599.319 kb on + strand, within Dsui_2437 at 2599.629 kb on + strand, within Dsui_2437 at 2599.637 kb on - strand, within Dsui_2437 at 2599.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,595,157 + +0.5 2,595,161 + +0.1 2,595,225 - -1.5 2,595,260 + -0.1 2,595,266 + +0.5 2,595,312 + +0.4 2,595,351 + +0.8 2,595,361 - +0.8 2,595,363 + -0.2 2,595,388 + -0.2 2,595,396 - +1.8 2,595,518 + Dsui_2435 0.30 -0.3 2,595,556 - Dsui_2435 0.37 +0.8 2,595,556 - Dsui_2435 0.37 -0.2 2,595,620 + Dsui_2435 0.49 -0.2 2,595,680 + Dsui_2435 0.60 +0.1 2,595,680 + Dsui_2435 0.60 +0.3 2,595,748 - Dsui_2435 0.73 +0.8 2,595,769 + Dsui_2435 0.77 -0.4 2,595,779 + Dsui_2435 0.79 -0.2 2,595,859 + -0.3 2,595,865 + +0.6 2,595,882 + -1.2 2,595,936 + +1.4 2,595,944 + -0.8 2,595,968 + +0.8 2,596,027 - -1.3 2,596,074 + +0.8 2,596,098 - -1.0 2,596,162 - -0.5 2,596,206 - -1.7 2,596,234 - -1.0 2,596,253 - -1.7 2,596,271 - Dsui_2436 0.11 -0.2 2,596,453 + Dsui_2436 0.17 -2.0 2,596,484 - Dsui_2436 0.18 -0.8 2,596,588 - Dsui_2436 0.22 -2.5 2,596,637 + Dsui_2436 0.24 -0.8 2,596,662 + -0.8 2,596,718 - Dsui_2436 0.27 -2.6 2,596,754 - Dsui_2436 0.28 -4.0 2,596,754 - Dsui_2436 0.28 -3.4 2,596,769 - Dsui_2436 0.29 -3.5 2,596,992 - Dsui_2436 0.37 -2.8 2,597,201 - Dsui_2436 0.44 -2.8 2,598,781 - +1.7 2,598,987 + +4.4 2,598,995 - +1.2 2,598,995 - +1.3 2,598,995 - +2.4 2,598,995 - +1.4 2,598,995 - +0.8 2,598,997 + +2.0 2,599,029 - +1.7 2,599,046 - +2.5 2,599,056 - +1.6 2,599,062 - +1.3 2,599,138 + +2.8 2,599,144 + -0.8 2,599,144 + +3.0 2,599,152 - +1.2 2,599,221 + +0.9 2,599,273 + +1.8 2,599,317 + Dsui_2437 0.13 +0.1 2,599,317 + Dsui_2437 0.13 +2.2 2,599,319 + Dsui_2437 0.14 +1.7 2,599,629 + Dsui_2437 0.45 +2.9 2,599,637 - Dsui_2437 0.45 +0.8 2,599,672 - -0.2
Or see this region's nucleotide sequence