Strain Fitness in Dechlorosoma suillum PS around Dsui_2433

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2432 and Dsui_2433 are separated by 76 nucleotidesDsui_2433 and Dsui_2434 are separated by 143 nucleotides Dsui_2432: Dsui_2432 - hypothetical protein, at 2,590,115 to 2,591,863 _2432 Dsui_2433: Dsui_2433 - aspartate/tyrosine/aromatic aminotransferase, at 2,591,940 to 2,593,148 _2433 Dsui_2434: Dsui_2434 - excinuclease ABC, B subunit, at 2,593,292 to 2,595,364 _2434 Position (kb) 2591 2592 2593 2594Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2591.002 kb on + strand, within Dsui_2432at 2591.002 kb on + strand, within Dsui_2432at 2591.129 kb on + strand, within Dsui_2432at 2591.169 kb on + strand, within Dsui_2432at 2591.212 kb on + strandat 2591.233 kb on + strand, within Dsui_2432at 2591.349 kb on + strand, within Dsui_2432at 2591.421 kb on + strand, within Dsui_2432at 2591.475 kb on + strand, within Dsui_2432at 2591.514 kb on + strand, within Dsui_2432at 2591.514 kb on + strand, within Dsui_2432at 2591.522 kb on - strand, within Dsui_2432at 2591.534 kb on - strandat 2591.582 kb on - strandat 2591.621 kb on + strand, within Dsui_2432at 2591.688 kb on + strand, within Dsui_2432at 2591.737 kb on - strandat 2591.751 kb on + strandat 2591.788 kb on + strandat 2591.803 kb on - strandat 2591.815 kb on - strandat 2591.835 kb on - strandat 2591.843 kb on - strandat 2591.893 kb on + strandat 2591.893 kb on + strandat 2591.893 kb on + strandat 2592.083 kb on - strand, within Dsui_2433at 2592.153 kb on - strand, within Dsui_2433at 2592.153 kb on - strand, within Dsui_2433at 2592.230 kb on + strandat 2592.230 kb on + strand, within Dsui_2433at 2592.238 kb on - strand, within Dsui_2433at 2592.253 kb on - strand, within Dsui_2433at 2592.289 kb on - strand, within Dsui_2433at 2592.289 kb on - strand, within Dsui_2433at 2592.307 kb on + strand, within Dsui_2433at 2592.321 kb on - strand, within Dsui_2433at 2592.375 kb on - strand, within Dsui_2433at 2592.434 kb on - strand, within Dsui_2433at 2592.442 kb on + strand, within Dsui_2433at 2592.478 kb on - strand, within Dsui_2433at 2592.548 kb on - strand, within Dsui_2433at 2592.762 kb on + strand, within Dsui_2433at 2592.781 kb on + strand, within Dsui_2433at 2592.834 kb on - strand, within Dsui_2433at 2592.915 kb on - strand, within Dsui_2433at 2592.915 kb on - strand, within Dsui_2433at 2592.915 kb on - strand, within Dsui_2433at 2592.919 kb on + strand, within Dsui_2433at 2592.961 kb on + strand, within Dsui_2433at 2593.054 kb on - strandat 2593.054 kb on - strandat 2593.054 kb on - strandat 2593.060 kb on - strandat 2593.154 kb on + strandat 2593.189 kb on + strandat 2593.440 kb on + strandat 2593.474 kb on + strandat 2593.555 kb on + strand, within Dsui_2434at 2593.555 kb on + strand, within Dsui_2434at 2593.555 kb on + strand, within Dsui_2434at 2593.600 kb on + strand, within Dsui_2434at 2593.611 kb on + strand, within Dsui_2434at 2593.624 kb on + strand, within Dsui_2434at 2593.638 kb on - strand, within Dsui_2434at 2593.650 kb on + strand, within Dsui_2434at 2593.650 kb on + strand, within Dsui_2434at 2593.658 kb on - strand, within Dsui_2434at 2593.719 kb on + strand, within Dsui_2434at 2593.765 kb on + strand, within Dsui_2434at 2593.947 kb on + strand, within Dsui_2434at 2593.995 kb on + strand, within Dsui_2434at 2594.007 kb on - strand, within Dsui_2434at 2594.009 kb on + strand, within Dsui_2434at 2594.145 kb on + strand, within Dsui_2434

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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2,591,002 + Dsui_2432 0.51 -0.8
2,591,002 + Dsui_2432 0.51 +0.8
2,591,129 + Dsui_2432 0.58 +0.8
2,591,169 + Dsui_2432 0.60 -0.8
2,591,212 + +0.8
2,591,233 + Dsui_2432 0.64 +0.8
2,591,349 + Dsui_2432 0.71 -0.2
2,591,421 + Dsui_2432 0.75 -1.2
2,591,475 + Dsui_2432 0.78 -1.8
2,591,514 + Dsui_2432 0.80 -1.2
2,591,514 + Dsui_2432 0.80 -0.8
2,591,522 - Dsui_2432 0.80 -0.2
2,591,534 - -0.2
2,591,582 - -0.2
2,591,621 + Dsui_2432 0.86 +0.8
2,591,688 + Dsui_2432 0.90 -0.2
2,591,737 - -1.8
2,591,751 + +0.8
2,591,788 + -0.8
2,591,803 - +0.8
2,591,815 - +0.8
2,591,835 - +0.8
2,591,843 - -0.2
2,591,893 + -0.8
2,591,893 + -1.2
2,591,893 + -0.8
2,592,083 - Dsui_2433 0.12 +2.3
2,592,153 - Dsui_2433 0.18 +2.3
2,592,153 - Dsui_2433 0.18 +2.2
2,592,230 + +0.8
2,592,230 + Dsui_2433 0.24 -0.2
2,592,238 - Dsui_2433 0.25 +2.5
2,592,253 - Dsui_2433 0.26 +2.5
2,592,289 - Dsui_2433 0.29 +2.8
2,592,289 - Dsui_2433 0.29 +2.0
2,592,307 + Dsui_2433 0.30 -0.2
2,592,321 - Dsui_2433 0.32 +2.5
2,592,375 - Dsui_2433 0.36 +1.4
2,592,434 - Dsui_2433 0.41 +2.3
2,592,442 + Dsui_2433 0.42 -0.2
2,592,478 - Dsui_2433 0.44 +2.0
2,592,548 - Dsui_2433 0.50 +2.1
2,592,762 + Dsui_2433 0.68 +0.8
2,592,781 + Dsui_2433 0.70 -1.2
2,592,834 - Dsui_2433 0.74 +2.5
2,592,915 - Dsui_2433 0.81 +2.7
2,592,915 - Dsui_2433 0.81 +2.3
2,592,915 - Dsui_2433 0.81 +2.4
2,592,919 + Dsui_2433 0.81 +0.8
2,592,961 + Dsui_2433 0.84 -0.8
2,593,054 - +1.9
2,593,054 - +1.7
2,593,054 - +2.4
2,593,060 - +2.5
2,593,154 + -0.2
2,593,189 + -0.2
2,593,440 + +2.4
2,593,474 + +1.1
2,593,555 + Dsui_2434 0.13 -0.7
2,593,555 + Dsui_2434 0.13 +0.8
2,593,555 + Dsui_2434 0.13 +0.6
2,593,600 + Dsui_2434 0.15 +1.8
2,593,611 + Dsui_2434 0.15 -2.4
2,593,624 + Dsui_2434 0.16 +0.8
2,593,638 - Dsui_2434 0.17 -0.8
2,593,650 + Dsui_2434 0.17 +0.8
2,593,650 + Dsui_2434 0.17 +0.8
2,593,658 - Dsui_2434 0.18 -1.2
2,593,719 + Dsui_2434 0.21 -1.9
2,593,765 + Dsui_2434 0.23 +0.8
2,593,947 + Dsui_2434 0.32 -0.8
2,593,995 + Dsui_2434 0.34 -0.8
2,594,007 - Dsui_2434 0.34 -1.8
2,594,009 + Dsui_2434 0.35 +0.4
2,594,145 + Dsui_2434 0.41 +0.4

Or see this region's nucleotide sequence