Strain Fitness in Dechlorosoma suillum PS around Dsui_2390

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2389 and Dsui_2390 are separated by 101 nucleotidesDsui_2390 and Dsui_2391 overlap by 4 nucleotidesDsui_2391 and Dsui_2392 are separated by 2 nucleotides Dsui_2389: Dsui_2389 - putative membrane protein, at 2,541,439 to 2,542,710 _2389 Dsui_2390: Dsui_2390 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 2,542,812 to 2,543,528 _2390 Dsui_2391: Dsui_2391 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 2,543,525 to 2,544,013 _2391 Dsui_2392: Dsui_2392 - 2''-5'' RNA ligase, at 2,544,016 to 2,544,591 _2392 Position (kb) 2542 2543 2544Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2541.931 kb on - strandat 2541.960 kb on + strandat 2541.997 kb on - strand, within Dsui_2389at 2542.019 kb on + strandat 2542.034 kb on + strandat 2542.092 kb on - strand, within Dsui_2389at 2542.149 kb on - strand, within Dsui_2389at 2542.181 kb on - strand, within Dsui_2389at 2542.218 kb on - strand, within Dsui_2389at 2542.345 kb on - strand, within Dsui_2389at 2542.374 kb on + strand, within Dsui_2389at 2542.430 kb on - strandat 2542.579 kb on - strand, within Dsui_2389at 2542.583 kb on - strandat 2542.583 kb on - strandat 2542.629 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.786 kb on - strandat 2544.017 kb on + strandat 2544.162 kb on - strandat 2544.192 kb on + strand, within Dsui_2392at 2544.221 kb on - strandat 2544.255 kb on - strandat 2544.255 kb on - strandat 2544.315 kb on + strand, within Dsui_2392at 2544.524 kb on + strand, within Dsui_2392

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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2,541,931 - +0.8
2,541,960 + +0.8
2,541,997 - Dsui_2389 0.44 -1.5
2,542,019 + +0.8
2,542,034 + -0.2
2,542,092 - Dsui_2389 0.51 +0.8
2,542,149 - Dsui_2389 0.56 -0.2
2,542,181 - Dsui_2389 0.58 +0.8
2,542,218 - Dsui_2389 0.61 -1.2
2,542,345 - Dsui_2389 0.71 +1.8
2,542,374 + Dsui_2389 0.74 -0.2
2,542,430 - +0.8
2,542,579 - Dsui_2389 0.90 -2.9
2,542,583 - +0.8
2,542,583 - -0.2
2,542,629 - +0.8
2,542,652 - -1.5
2,542,652 - +0.8
2,542,652 - +0.8
2,542,652 - -0.2
2,542,652 - -1.5
2,542,652 - +0.8
2,542,652 - +0.8
2,542,786 - +0.8
2,544,017 + -0.4
2,544,162 - -0.2
2,544,192 + Dsui_2392 0.31 +0.1
2,544,221 - +0.8
2,544,255 - +0.8
2,544,255 - -0.2
2,544,315 + Dsui_2392 0.52 -0.2
2,544,524 + Dsui_2392 0.88 -1.0

Or see this region's nucleotide sequence