Strain Fitness in Dechlorosoma suillum PS around Dsui_2349

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2347 and Dsui_2348 are separated by 202 nucleotidesDsui_2348 and Dsui_2349 are separated by 294 nucleotidesDsui_2349 and Dsui_2350 are separated by 141 nucleotidesDsui_2350 and Dsui_2351 overlap by 50 nucleotides Dsui_2347: Dsui_2347 - aconitate hydratase 1, at 2,498,781 to 2,501,477 _2347 Dsui_2348: Dsui_2348 - hypothetical protein, at 2,501,680 to 2,502,048 _2348 Dsui_2349: Dsui_2349 - Zn-dependent hydrolase, glyoxylase, at 2,502,343 to 2,503,311 _2349 Dsui_2350: Dsui_2350 - putative transcriptional regulator, at 2,503,453 to 2,503,917 _2350 Dsui_2351: Dsui_2351 - uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein, at 2,503,868 to 2,504,242 _2351 Position (kb) 2502 2503 2504Strain fitness (log2 ratio) -2 -1 0 1at 2501.522 kb on - strandat 2501.655 kb on + strandat 2501.663 kb on - strandat 2501.663 kb on - strandat 2501.725 kb on - strand, within Dsui_2348at 2501.731 kb on - strand, within Dsui_2348at 2501.769 kb on - strandat 2501.770 kb on - strand, within Dsui_2348at 2501.780 kb on - strand, within Dsui_2348at 2501.809 kb on - strand, within Dsui_2348at 2501.895 kb on + strandat 2502.038 kb on - strandat 2502.038 kb on - strandat 2502.140 kb on + strandat 2502.216 kb on - strandat 2502.317 kb on - strandat 2502.319 kb on - strandat 2502.334 kb on + strandat 2502.397 kb on - strandat 2502.436 kb on - strandat 2502.436 kb on - strandat 2502.461 kb on - strand, within Dsui_2349at 2502.496 kb on - strand, within Dsui_2349at 2502.637 kb on - strand, within Dsui_2349at 2502.668 kb on - strand, within Dsui_2349at 2502.896 kb on + strandat 2502.904 kb on - strand, within Dsui_2349at 2502.907 kb on + strand, within Dsui_2349at 2502.912 kb on + strandat 2502.938 kb on - strandat 2502.958 kb on - strand, within Dsui_2349at 2503.001 kb on - strand, within Dsui_2349at 2503.001 kb on - strand, within Dsui_2349at 2503.042 kb on - strand, within Dsui_2349at 2503.076 kb on - strand, within Dsui_2349at 2503.106 kb on + strand, within Dsui_2349at 2503.246 kb on - strandat 2503.257 kb on - strandat 2503.257 kb on - strandat 2503.308 kb on - strandat 2503.354 kb on + strandat 2503.515 kb on + strand, within Dsui_2350at 2503.539 kb on + strandat 2503.681 kb on + strand, within Dsui_2350at 2503.725 kb on + strandat 2503.812 kb on + strandat 2503.951 kb on + strandat 2504.091 kb on + strandat 2504.091 kb on + strandat 2504.126 kb on + strandat 2504.136 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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2,501,522 - -0.3
2,501,655 + -0.3
2,501,663 - -0.7
2,501,663 - -1.8
2,501,725 - Dsui_2348 0.12 -1.3
2,501,731 - Dsui_2348 0.14 -2.4
2,501,769 - +0.2
2,501,770 - Dsui_2348 0.24 -0.3
2,501,780 - Dsui_2348 0.27 -1.0
2,501,809 - Dsui_2348 0.35 +1.7
2,501,895 + +0.7
2,502,038 - -0.6
2,502,038 - +0.7
2,502,140 + +0.7
2,502,216 - -0.3
2,502,317 - -0.8
2,502,319 - -0.8
2,502,334 + +0.7
2,502,397 - +0.7
2,502,436 - -1.6
2,502,436 - +0.7
2,502,461 - Dsui_2349 0.12 -1.3
2,502,496 - Dsui_2349 0.16 +0.7
2,502,637 - Dsui_2349 0.30 -0.3
2,502,668 - Dsui_2349 0.34 -1.8
2,502,896 + -0.3
2,502,904 - Dsui_2349 0.58 -1.3
2,502,907 + Dsui_2349 0.58 -1.8
2,502,912 + +0.7
2,502,938 - +0.7
2,502,958 - Dsui_2349 0.63 -0.3
2,503,001 - Dsui_2349 0.68 -0.3
2,503,001 - Dsui_2349 0.68 -0.8
2,503,042 - Dsui_2349 0.72 -0.8
2,503,076 - Dsui_2349 0.76 -1.8
2,503,106 + Dsui_2349 0.79 -0.8
2,503,246 - -1.6
2,503,257 - +0.7
2,503,257 - +0.7
2,503,308 - +0.7
2,503,354 + -2.1
2,503,515 + Dsui_2350 0.13 +1.7
2,503,539 + +0.7
2,503,681 + Dsui_2350 0.49 -0.8
2,503,725 + +0.7
2,503,812 + +0.7
2,503,951 + -0.8
2,504,091 + +0.7
2,504,091 + -0.3
2,504,126 + -0.3
2,504,136 + +0.7

Or see this region's nucleotide sequence