Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2347 and Dsui_2348 are separated by 202 nucleotides Dsui_2348 and Dsui_2349 are separated by 294 nucleotides
Dsui_2347: Dsui_2347 - aconitate hydratase 1, at 2,498,781 to 2,501,477
_2347
Dsui_2348: Dsui_2348 - hypothetical protein, at 2,501,680 to 2,502,048
_2348
Dsui_2349: Dsui_2349 - Zn-dependent hydrolase, glyoxylase, at 2,502,343 to 2,503,311
_2349
Position (kb)
2501
2502
2503 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2500.708 kb on + strand at 2500.732 kb on + strand at 2500.735 kb on - strand, within Dsui_2347 at 2500.742 kb on + strand at 2500.750 kb on - strand, within Dsui_2347 at 2500.841 kb on - strand, within Dsui_2347 at 2500.851 kb on - strand, within Dsui_2347 at 2500.863 kb on - strand, within Dsui_2347 at 2500.916 kb on - strand, within Dsui_2347 at 2500.928 kb on + strand at 2500.961 kb on + strand at 2500.969 kb on - strand, within Dsui_2347 at 2500.969 kb on - strand, within Dsui_2347 at 2501.027 kb on - strand, within Dsui_2347 at 2501.054 kb on - strand, within Dsui_2347 at 2501.076 kb on + strand at 2501.089 kb on - strand, within Dsui_2347 at 2501.522 kb on - strand at 2501.655 kb on + strand at 2501.663 kb on - strand at 2501.663 kb on - strand at 2501.725 kb on - strand, within Dsui_2348 at 2501.731 kb on - strand, within Dsui_2348 at 2501.769 kb on - strand at 2501.770 kb on - strand, within Dsui_2348 at 2501.780 kb on - strand, within Dsui_2348 at 2501.809 kb on - strand, within Dsui_2348 at 2501.895 kb on + strand at 2502.038 kb on - strand at 2502.038 kb on - strand at 2502.140 kb on + strand at 2502.216 kb on - strand at 2502.317 kb on - strand at 2502.319 kb on - strand at 2502.334 kb on + strand at 2502.397 kb on - strand at 2502.436 kb on - strand at 2502.436 kb on - strand at 2502.461 kb on - strand, within Dsui_2349 at 2502.496 kb on - strand, within Dsui_2349 at 2502.637 kb on - strand, within Dsui_2349 at 2502.668 kb on - strand, within Dsui_2349 at 2502.896 kb on + strand at 2502.904 kb on - strand, within Dsui_2349 at 2502.907 kb on + strand, within Dsui_2349 at 2502.912 kb on + strand at 2502.938 kb on - strand at 2502.958 kb on - strand, within Dsui_2349 at 2503.001 kb on - strand, within Dsui_2349 at 2503.001 kb on - strand, within Dsui_2349 at 2503.042 kb on - strand, within Dsui_2349
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,500,708 + -0.2 2,500,732 + +0.8 2,500,735 - Dsui_2347 0.72 -1.6 2,500,742 + +0.8 2,500,750 - Dsui_2347 0.73 -0.2 2,500,841 - Dsui_2347 0.76 -0.2 2,500,851 - Dsui_2347 0.77 +0.8 2,500,863 - Dsui_2347 0.77 +1.8 2,500,916 - Dsui_2347 0.79 +2.3 2,500,928 + +0.8 2,500,961 + -1.6 2,500,969 - Dsui_2347 0.81 +0.8 2,500,969 - Dsui_2347 0.81 -1.2 2,501,027 - Dsui_2347 0.83 -0.3 2,501,054 - Dsui_2347 0.84 -1.3 2,501,076 + +0.7 2,501,089 - Dsui_2347 0.86 +0.5 2,501,522 - -0.3 2,501,655 + -0.3 2,501,663 - -0.7 2,501,663 - -1.8 2,501,725 - Dsui_2348 0.12 -1.3 2,501,731 - Dsui_2348 0.14 -2.4 2,501,769 - +0.2 2,501,770 - Dsui_2348 0.24 -0.3 2,501,780 - Dsui_2348 0.27 -1.0 2,501,809 - Dsui_2348 0.35 +1.7 2,501,895 + +0.7 2,502,038 - -0.6 2,502,038 - +0.7 2,502,140 + +0.7 2,502,216 - -0.3 2,502,317 - -0.8 2,502,319 - -0.8 2,502,334 + +0.7 2,502,397 - +0.7 2,502,436 - -1.6 2,502,436 - +0.7 2,502,461 - Dsui_2349 0.12 -1.3 2,502,496 - Dsui_2349 0.16 +0.7 2,502,637 - Dsui_2349 0.30 -0.3 2,502,668 - Dsui_2349 0.34 -1.8 2,502,896 + -0.3 2,502,904 - Dsui_2349 0.58 -1.3 2,502,907 + Dsui_2349 0.58 -1.8 2,502,912 + +0.7 2,502,938 - +0.7 2,502,958 - Dsui_2349 0.63 -0.3 2,503,001 - Dsui_2349 0.68 -0.3 2,503,001 - Dsui_2349 0.68 -0.8 2,503,042 - Dsui_2349 0.72 -0.8
Or see this region's nucleotide sequence