Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2334 and Dsui_2335 are separated by 29 nucleotides Dsui_2335 and Dsui_2336 overlap by 4 nucleotides Dsui_2336 and Dsui_2337 are separated by 383 nucleotides Dsui_2337 and Dsui_2339 are separated by 254 nucleotides
Dsui_2334: Dsui_2334 - tRNA-dihydrouridine synthase, at 2,487,712 to 2,488,674
_2334
Dsui_2335: Dsui_2335 - Integral membrane protein CcmA involved in cell shape determination, at 2,488,704 to 2,489,153
_2335
Dsui_2336: Dsui_2336 - hypothetical protein, at 2,489,150 to 2,489,743
_2336
Dsui_2337: Dsui_2337 - putative Fe-S oxidoreductase, at 2,490,127 to 2,490,468
_2337
Dsui_2339: Dsui_2339 - putative domain HDIG-containing protein, at 2,490,723 to 2,491,634
_2339
Position (kb)
2489
2490 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2488.260 kb on + strand, within Dsui_2334 at 2488.362 kb on - strand, within Dsui_2334 at 2488.461 kb on + strand, within Dsui_2334 at 2488.521 kb on - strand, within Dsui_2334 at 2488.539 kb on + strand, within Dsui_2334 at 2488.606 kb on + strand at 2488.730 kb on + strand at 2488.742 kb on - strand at 2488.752 kb on - strand, within Dsui_2335 at 2488.849 kb on + strand at 2488.849 kb on + strand, within Dsui_2335 at 2488.849 kb on + strand, within Dsui_2335 at 2488.857 kb on - strand, within Dsui_2335 at 2488.857 kb on - strand, within Dsui_2335 at 2488.857 kb on - strand, within Dsui_2335 at 2488.914 kb on + strand, within Dsui_2335 at 2488.915 kb on + strand at 2489.033 kb on + strand, within Dsui_2335 at 2489.061 kb on + strand, within Dsui_2335 at 2489.067 kb on - strand, within Dsui_2335 at 2489.077 kb on - strand, within Dsui_2335 at 2489.094 kb on + strand, within Dsui_2335 at 2489.102 kb on - strand, within Dsui_2335 at 2489.130 kb on + strand at 2489.230 kb on + strand, within Dsui_2336 at 2489.238 kb on - strand, within Dsui_2336 at 2489.238 kb on - strand, within Dsui_2336 at 2489.238 kb on - strand, within Dsui_2336 at 2489.280 kb on - strand, within Dsui_2336 at 2489.285 kb on - strand, within Dsui_2336 at 2489.411 kb on - strand, within Dsui_2336 at 2489.443 kb on - strand, within Dsui_2336 at 2489.469 kb on - strand, within Dsui_2336 at 2489.469 kb on - strand, within Dsui_2336 at 2489.469 kb on - strand, within Dsui_2336 at 2489.469 kb on - strand, within Dsui_2336 at 2489.554 kb on + strand, within Dsui_2336 at 2489.648 kb on + strand, within Dsui_2336 at 2489.711 kb on - strand at 2489.805 kb on - strand at 2489.859 kb on + strand at 2489.986 kb on + strand at 2490.040 kb on + strand at 2490.087 kb on + strand at 2490.523 kb on + strand at 2490.523 kb on + strand at 2490.613 kb on + strand at 2490.674 kb on + strand at 2490.692 kb on + strand at 2490.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,488,260 + Dsui_2334 0.57 +0.8 2,488,362 - Dsui_2334 0.67 +0.8 2,488,461 + Dsui_2334 0.78 -0.4 2,488,521 - Dsui_2334 0.84 +0.0 2,488,539 + Dsui_2334 0.86 +0.0 2,488,606 + -0.5 2,488,730 + -1.8 2,488,742 - -0.2 2,488,752 - Dsui_2335 0.11 -0.1 2,488,849 + -0.8 2,488,849 + Dsui_2335 0.32 -2.7 2,488,849 + Dsui_2335 0.32 -0.2 2,488,857 - Dsui_2335 0.34 +0.6 2,488,857 - Dsui_2335 0.34 +0.5 2,488,857 - Dsui_2335 0.34 -0.6 2,488,914 + Dsui_2335 0.47 -1.2 2,488,915 + +0.8 2,489,033 + Dsui_2335 0.73 -0.2 2,489,061 + Dsui_2335 0.79 -0.2 2,489,067 - Dsui_2335 0.81 -0.8 2,489,077 - Dsui_2335 0.83 -0.3 2,489,094 + Dsui_2335 0.87 -2.9 2,489,102 - Dsui_2335 0.88 -0.1 2,489,130 + +0.8 2,489,230 + Dsui_2336 0.13 -2.2 2,489,238 - Dsui_2336 0.15 -0.2 2,489,238 - Dsui_2336 0.15 -0.4 2,489,238 - Dsui_2336 0.15 +0.8 2,489,280 - Dsui_2336 0.22 -0.3 2,489,285 - Dsui_2336 0.23 -0.6 2,489,411 - Dsui_2336 0.44 -0.0 2,489,443 - Dsui_2336 0.49 +2.5 2,489,469 - Dsui_2336 0.54 -0.4 2,489,469 - Dsui_2336 0.54 +0.2 2,489,469 - Dsui_2336 0.54 +0.1 2,489,469 - Dsui_2336 0.54 -0.1 2,489,554 + Dsui_2336 0.68 -0.2 2,489,648 + Dsui_2336 0.84 -0.2 2,489,711 - -0.3 2,489,805 - -0.6 2,489,859 + +0.8 2,489,986 + +0.8 2,490,040 + +0.8 2,490,087 + -0.2 2,490,523 + -0.2 2,490,523 + -0.2 2,490,613 + -0.2 2,490,674 + -0.7 2,490,692 + -0.2 2,490,743 - +0.8
Or see this region's nucleotide sequence