Strain Fitness in Dechlorosoma suillum PS around Dsui_2278

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2277 and Dsui_2278 overlap by 4 nucleotidesDsui_2278 and Dsui_2279 are separated by 0 nucleotides Dsui_2277: Dsui_2277 - Rhs element Vgr protein, at 2,428,202 to 2,431,027 _2277 Dsui_2278: Dsui_2278 - PGAP1-like protein, at 2,431,024 to 2,432,652 _2278 Dsui_2279: Dsui_2279 - hypothetical protein, at 2,432,653 to 2,433,753 _2279 Position (kb) 2431 2432 2433Strain fitness (log2 ratio) -2 -1 0 1 2at 2430.044 kb on + strand, within Dsui_2277at 2430.062 kb on + strandat 2430.102 kb on - strand, within Dsui_2277at 2430.105 kb on + strandat 2430.193 kb on + strand, within Dsui_2277at 2430.242 kb on + strandat 2430.247 kb on + strandat 2430.255 kb on - strand, within Dsui_2277at 2430.261 kb on - strandat 2430.291 kb on - strandat 2430.440 kb on + strandat 2430.512 kb on + strandat 2430.517 kb on + strandat 2430.565 kb on + strandat 2430.620 kb on - strand, within Dsui_2277at 2430.823 kb on + strandat 2430.936 kb on - strandat 2430.973 kb on - strandat 2431.209 kb on + strand, within Dsui_2278at 2431.222 kb on + strand, within Dsui_2278at 2431.222 kb on + strand, within Dsui_2278at 2431.227 kb on + strand, within Dsui_2278at 2431.319 kb on + strandat 2431.322 kb on - strand, within Dsui_2278at 2431.322 kb on - strand, within Dsui_2278at 2431.346 kb on + strand, within Dsui_2278at 2431.351 kb on + strandat 2431.355 kb on - strand, within Dsui_2278at 2431.374 kb on + strand, within Dsui_2278at 2431.461 kb on + strandat 2431.510 kb on + strand, within Dsui_2278at 2431.538 kb on - strand, within Dsui_2278at 2431.550 kb on - strandat 2431.556 kb on - strand, within Dsui_2278at 2431.569 kb on - strand, within Dsui_2278at 2431.604 kb on - strand, within Dsui_2278at 2431.636 kb on + strand, within Dsui_2278at 2431.673 kb on + strand, within Dsui_2278at 2431.698 kb on + strand, within Dsui_2278at 2431.706 kb on - strand, within Dsui_2278at 2431.713 kb on - strand, within Dsui_2278at 2431.730 kb on - strand, within Dsui_2278at 2431.731 kb on - strand, within Dsui_2278at 2431.760 kb on + strand, within Dsui_2278at 2431.817 kb on + strand, within Dsui_2278at 2431.908 kb on + strand, within Dsui_2278at 2431.922 kb on - strand, within Dsui_2278at 2431.933 kb on + strandat 2431.933 kb on + strand, within Dsui_2278at 2431.933 kb on + strandat 2431.933 kb on + strand, within Dsui_2278at 2431.941 kb on - strand, within Dsui_2278at 2431.941 kb on - strand, within Dsui_2278at 2431.949 kb on + strand, within Dsui_2278at 2432.010 kb on + strand, within Dsui_2278at 2432.010 kb on + strand, within Dsui_2278at 2432.018 kb on - strandat 2432.028 kb on + strand, within Dsui_2278at 2432.055 kb on + strand, within Dsui_2278at 2432.070 kb on - strandat 2432.082 kb on + strandat 2432.082 kb on + strand, within Dsui_2278at 2432.083 kb on + strand, within Dsui_2278at 2432.090 kb on - strandat 2432.153 kb on + strand, within Dsui_2278at 2432.154 kb on + strandat 2432.199 kb on - strand, within Dsui_2278at 2432.220 kb on + strand, within Dsui_2278at 2432.252 kb on - strand, within Dsui_2278at 2432.357 kb on + strandat 2432.363 kb on + strandat 2432.389 kb on + strand, within Dsui_2278at 2432.408 kb on + strandat 2432.416 kb on - strand, within Dsui_2278at 2432.436 kb on + strandat 2432.444 kb on + strand, within Dsui_2278at 2432.479 kb on + strand, within Dsui_2278at 2432.506 kb on - strandat 2432.514 kb on + strandat 2432.514 kb on + strandat 2432.527 kb on + strandat 2432.527 kb on + strandat 2432.527 kb on + strandat 2432.527 kb on + strandat 2432.527 kb on + strandat 2432.527 kb on + strandat 2432.532 kb on + strandat 2432.535 kb on - strandat 2432.564 kb on - strandat 2432.582 kb on + strandat 2432.582 kb on + strandat 2432.673 kb on + strandat 2432.723 kb on + strandat 2432.723 kb on + strandat 2432.728 kb on + strandat 2432.771 kb on + strandat 2432.771 kb on + strandat 2432.779 kb on - strandat 2432.784 kb on + strand, within Dsui_2279at 2432.832 kb on + strand, within Dsui_2279at 2432.832 kb on + strand, within Dsui_2279at 2432.832 kb on + strand, within Dsui_2279at 2432.891 kb on + strandat 2432.899 kb on + strand, within Dsui_2279at 2432.899 kb on + strand, within Dsui_2279at 2432.926 kb on + strand, within Dsui_2279at 2432.947 kb on + strand, within Dsui_2279at 2433.006 kb on + strand, within Dsui_2279at 2433.006 kb on + strandat 2433.059 kb on + strand, within Dsui_2279at 2433.081 kb on + strand, within Dsui_2279at 2433.099 kb on + strand, within Dsui_2279at 2433.107 kb on - strandat 2433.110 kb on + strand, within Dsui_2279at 2433.150 kb on - strandat 2433.183 kb on - strand, within Dsui_2279at 2433.209 kb on + strand, within Dsui_2279at 2433.222 kb on - strandat 2433.226 kb on + strandat 2433.226 kb on + strand, within Dsui_2279at 2433.227 kb on - strandat 2433.232 kb on + strand, within Dsui_2279at 2433.234 kb on - strandat 2433.284 kb on - strand, within Dsui_2279at 2433.289 kb on - strandat 2433.304 kb on + strandat 2433.317 kb on + strandat 2433.322 kb on + strand, within Dsui_2279at 2433.330 kb on - strand, within Dsui_2279at 2433.335 kb on - strand, within Dsui_2279at 2433.341 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strandat 2433.371 kb on + strandat 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strandat 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.371 kb on + strand, within Dsui_2279at 2433.379 kb on - strand, within Dsui_2279at 2433.379 kb on - strandat 2433.379 kb on - strand, within Dsui_2279at 2433.379 kb on - strand, within Dsui_2279at 2433.379 kb on - strand, within Dsui_2279at 2433.379 kb on - strandat 2433.379 kb on - strand, within Dsui_2279at 2433.379 kb on - strand, within Dsui_2279at 2433.379 kb on - strand, within Dsui_2279at 2433.379 kb on - strand, within Dsui_2279at 2433.400 kb on + strand, within Dsui_2279at 2433.405 kb on + strand, within Dsui_2279at 2433.405 kb on + strand, within Dsui_2279at 2433.405 kb on + strand, within Dsui_2279at 2433.405 kb on + strand, within Dsui_2279at 2433.405 kb on + strand, within Dsui_2279at 2433.405 kb on + strand, within Dsui_2279at 2433.407 kb on - strandat 2433.408 kb on - strand, within Dsui_2279at 2433.410 kb on + strand, within Dsui_2279at 2433.413 kb on - strand, within Dsui_2279at 2433.425 kb on - strandat 2433.434 kb on + strand, within Dsui_2279at 2433.450 kb on + strand, within Dsui_2279at 2433.509 kb on + strand, within Dsui_2279at 2433.509 kb on + strand, within Dsui_2279at 2433.516 kb on - strandat 2433.549 kb on - strand, within Dsui_2279at 2433.569 kb on + strandat 2433.577 kb on - strand, within Dsui_2279

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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2,430,044 + Dsui_2277 0.65 -0.2
2,430,062 + +0.8
2,430,102 - Dsui_2277 0.67 -0.2
2,430,105 + +0.8
2,430,193 + Dsui_2277 0.70 +0.8
2,430,242 + +0.8
2,430,247 + +0.8
2,430,255 - Dsui_2277 0.73 +0.8
2,430,261 - +0.8
2,430,291 - +0.8
2,430,440 + +0.8
2,430,512 + +0.8
2,430,517 + +0.8
2,430,565 + -0.2
2,430,620 - Dsui_2277 0.86 -0.8
2,430,823 + +0.8
2,430,936 - +0.8
2,430,973 - +0.8
2,431,209 + Dsui_2278 0.11 +0.8
2,431,222 + Dsui_2278 0.12 -0.2
2,431,222 + Dsui_2278 0.12 -0.2
2,431,227 + Dsui_2278 0.12 +0.8
2,431,319 + -0.2
2,431,322 - Dsui_2278 0.18 -0.2
2,431,322 - Dsui_2278 0.18 +0.8
2,431,346 + Dsui_2278 0.20 -0.8
2,431,351 + +0.8
2,431,355 - Dsui_2278 0.20 -1.8
2,431,374 + Dsui_2278 0.21 -0.8
2,431,461 + +0.8
2,431,510 + Dsui_2278 0.30 +0.8
2,431,538 - Dsui_2278 0.32 -0.8
2,431,550 - +0.8
2,431,556 - Dsui_2278 0.33 -2.0
2,431,569 - Dsui_2278 0.33 -0.2
2,431,604 - Dsui_2278 0.36 +0.8
2,431,636 + Dsui_2278 0.38 +0.8
2,431,673 + Dsui_2278 0.40 -0.2
2,431,698 + Dsui_2278 0.41 -1.2
2,431,706 - Dsui_2278 0.42 -0.2
2,431,713 - Dsui_2278 0.42 +0.8
2,431,730 - Dsui_2278 0.43 +0.8
2,431,731 - Dsui_2278 0.43 -0.8
2,431,760 + Dsui_2278 0.45 -0.2
2,431,817 + Dsui_2278 0.49 +0.8
2,431,908 + Dsui_2278 0.54 +0.8
2,431,922 - Dsui_2278 0.55 +0.8
2,431,933 + +0.8
2,431,933 + Dsui_2278 0.56 -1.2
2,431,933 + +0.8
2,431,933 + Dsui_2278 0.56 -0.2
2,431,941 - Dsui_2278 0.56 -0.2
2,431,941 - Dsui_2278 0.56 +0.8
2,431,949 + Dsui_2278 0.57 -0.2
2,432,010 + Dsui_2278 0.61 -0.2
2,432,010 + Dsui_2278 0.61 -1.2
2,432,018 - +0.8
2,432,028 + Dsui_2278 0.62 +0.8
2,432,055 + Dsui_2278 0.63 -0.2
2,432,070 - +0.8
2,432,082 + +0.8
2,432,082 + Dsui_2278 0.65 -0.8
2,432,083 + Dsui_2278 0.65 -1.2
2,432,090 - +0.8
2,432,153 + Dsui_2278 0.69 -1.5
2,432,154 + +0.8
2,432,199 - Dsui_2278 0.72 -1.8
2,432,220 + Dsui_2278 0.73 -0.2
2,432,252 - Dsui_2278 0.75 -0.2
2,432,357 + +0.8
2,432,363 + +0.8
2,432,389 + Dsui_2278 0.84 -0.2
2,432,408 + +0.8
2,432,416 - Dsui_2278 0.85 -1.2
2,432,436 + +0.8
2,432,444 + Dsui_2278 0.87 -0.8
2,432,479 + Dsui_2278 0.89 +0.8
2,432,506 - -0.8
2,432,514 + -0.2
2,432,514 + +0.8
2,432,527 + +0.8
2,432,527 + +0.8
2,432,527 + +0.8
2,432,527 + -0.2
2,432,527 + +0.8
2,432,527 + -0.2
2,432,532 + -0.8
2,432,535 - +0.8
2,432,564 - +0.8
2,432,582 + +0.8
2,432,582 + +0.8
2,432,673 + -0.2
2,432,723 + +0.8
2,432,723 + +0.8
2,432,728 + -1.8
2,432,771 + +0.8
2,432,771 + +0.8
2,432,779 - -0.2
2,432,784 + Dsui_2279 0.12 +0.8
2,432,832 + Dsui_2279 0.16 -0.1
2,432,832 + Dsui_2279 0.16 +2.4
2,432,832 + Dsui_2279 0.16 -0.6
2,432,891 + +0.8
2,432,899 + Dsui_2279 0.22 -0.8
2,432,899 + Dsui_2279 0.22 +0.8
2,432,926 + Dsui_2279 0.25 +0.8
2,432,947 + Dsui_2279 0.27 -0.2
2,433,006 + Dsui_2279 0.32 -1.2
2,433,006 + +0.8
2,433,059 + Dsui_2279 0.37 -1.2
2,433,081 + Dsui_2279 0.39 -0.3
2,433,099 + Dsui_2279 0.41 -0.2
2,433,107 - +0.8
2,433,110 + Dsui_2279 0.42 -0.2
2,433,150 - +0.8
2,433,183 - Dsui_2279 0.48 +0.8
2,433,209 + Dsui_2279 0.50 +0.8
2,433,222 - +0.8
2,433,226 + +0.8
2,433,226 + Dsui_2279 0.52 -0.8
2,433,227 - +0.8
2,433,232 + Dsui_2279 0.53 -1.5
2,433,234 - +0.8
2,433,284 - Dsui_2279 0.57 -0.2
2,433,289 - -1.2
2,433,304 + -0.2
2,433,317 + +0.8
2,433,322 + Dsui_2279 0.61 -1.5
2,433,330 - Dsui_2279 0.61 -0.2
2,433,335 - Dsui_2279 0.62 -0.8
2,433,341 + Dsui_2279 0.62 +0.8
2,433,371 + Dsui_2279 0.65 -1.2
2,433,371 + Dsui_2279 0.65 +0.2
2,433,371 + Dsui_2279 0.65 +0.8
2,433,371 + +0.8
2,433,371 + +0.8
2,433,371 + Dsui_2279 0.65 -1.8
2,433,371 + +0.8
2,433,371 + Dsui_2279 0.65 -0.2
2,433,371 + Dsui_2279 0.65 -0.2
2,433,371 + Dsui_2279 0.65 -0.2
2,433,371 + Dsui_2279 0.65 +0.8
2,433,371 + Dsui_2279 0.65 -0.2
2,433,371 + Dsui_2279 0.65 +0.8
2,433,371 + Dsui_2279 0.65 -1.8
2,433,379 - Dsui_2279 0.66 -0.2
2,433,379 - +0.8
2,433,379 - Dsui_2279 0.66 +0.8
2,433,379 - Dsui_2279 0.66 +0.8
2,433,379 - Dsui_2279 0.66 -1.2
2,433,379 - +0.8
2,433,379 - Dsui_2279 0.66 -0.2
2,433,379 - Dsui_2279 0.66 +0.8
2,433,379 - Dsui_2279 0.66 +0.8
2,433,379 - Dsui_2279 0.66 -0.2
2,433,400 + Dsui_2279 0.68 +0.8
2,433,405 + Dsui_2279 0.68 -0.8
2,433,405 + Dsui_2279 0.68 -1.5
2,433,405 + Dsui_2279 0.68 +0.8
2,433,405 + Dsui_2279 0.68 -0.2
2,433,405 + Dsui_2279 0.68 +0.8
2,433,405 + Dsui_2279 0.68 +0.8
2,433,407 - +0.8
2,433,408 - Dsui_2279 0.69 -0.8
2,433,410 + Dsui_2279 0.69 +0.8
2,433,413 - Dsui_2279 0.69 -1.8
2,433,425 - +0.8
2,433,434 + Dsui_2279 0.71 -1.2
2,433,450 + Dsui_2279 0.72 -0.2
2,433,509 + Dsui_2279 0.78 -0.8
2,433,509 + Dsui_2279 0.78 +0.8
2,433,516 - +0.8
2,433,549 - Dsui_2279 0.81 -0.2
2,433,569 + +0.8
2,433,577 - Dsui_2279 0.84 +0.8

Or see this region's nucleotide sequence