Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2257 and Dsui_2258 are separated by 135 nucleotides Dsui_2258 and Dsui_2259 are separated by 85 nucleotides Dsui_2259 and Dsui_2260 are separated by 348 nucleotides
Dsui_2257: Dsui_2257 - transcriptional regulator, at 2,406,494 to 2,407,450
_2257
Dsui_2258: Dsui_2258 - cupin domain-containing protein, at 2,407,586 to 2,407,921
_2258
Dsui_2259: Dsui_2259 - hypothetical protein, at 2,408,007 to 2,408,198
_2259
Dsui_2260: Dsui_2260 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,408,547 to 2,410,013
_2260
Position (kb)
2408
2409 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2407.208 kb on + strand, within Dsui_2257 at 2407.284 kb on + strand, within Dsui_2257 at 2407.292 kb on - strand at 2407.356 kb on + strand at 2407.455 kb on + strand at 2407.513 kb on - strand at 2407.580 kb on - strand at 2407.614 kb on - strand at 2407.627 kb on + strand, within Dsui_2258 at 2407.982 kb on - strand at 2408.011 kb on - strand at 2408.059 kb on - strand, within Dsui_2259 at 2408.157 kb on - strand, within Dsui_2259 at 2408.191 kb on - strand at 2408.193 kb on - strand at 2408.590 kb on - strand at 2408.634 kb on + strand at 2408.639 kb on + strand at 2408.686 kb on - strand at 2408.766 kb on + strand at 2408.892 kb on - strand at 2408.939 kb on - strand at 2408.942 kb on + strand at 2408.996 kb on + strand, within Dsui_2260 at 2408.999 kb on + strand at 2409.004 kb on - strand, within Dsui_2260 at 2409.015 kb on - strand, within Dsui_2260 at 2409.022 kb on + strand at 2409.025 kb on - strand at 2409.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,407,208 + Dsui_2257 0.75 +1.0 2,407,284 + Dsui_2257 0.83 +0.6 2,407,292 - +0.8 2,407,356 + +0.6 2,407,455 + +0.8 2,407,513 - -0.8 2,407,580 - +0.1 2,407,614 - -0.5 2,407,627 + Dsui_2258 0.12 -1.3 2,407,982 - +0.6 2,408,011 - -0.4 2,408,059 - Dsui_2259 0.27 -1.0 2,408,157 - Dsui_2259 0.78 -3.1 2,408,191 - -0.6 2,408,193 - -0.9 2,408,590 - +0.8 2,408,634 + -0.8 2,408,639 + +0.8 2,408,686 - -0.2 2,408,766 + -0.2 2,408,892 - +0.8 2,408,939 - +0.8 2,408,942 + +0.8 2,408,996 + Dsui_2260 0.31 -2.0 2,408,999 + +0.8 2,409,004 - Dsui_2260 0.31 +0.8 2,409,015 - Dsui_2260 0.32 -2.4 2,409,022 + +0.8 2,409,025 - +0.8 2,409,135 - +0.8
Or see this region's nucleotide sequence