Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2238 and Dsui_2239 are separated by 459 nucleotides Dsui_2239 and Dsui_2240 are separated by 161 nucleotides
Dsui_2238: Dsui_2238 - ABC-type dipeptide transport system, periplasmic component, at 2,381,177 to 2,382,739
_2238
Dsui_2239: Dsui_2239 - tRNA (uracil-5-)-methyltransferase, at 2,383,199 to 2,384,287
_2239
Dsui_2240: Dsui_2240 - PAS domain S-box, at 2,384,449 to 2,388,288
_2240
Position (kb)
2383
2384
2385 Strain fitness (log2 ratio)
-1
0
1
2 at 2382.327 kb on + strand, within Dsui_2238 at 2382.382 kb on + strand at 2382.412 kb on + strand, within Dsui_2238 at 2382.527 kb on - strand at 2382.531 kb on - strand, within Dsui_2238 at 2382.562 kb on + strand at 2382.782 kb on - strand at 2382.936 kb on + strand at 2383.038 kb on - strand at 2383.038 kb on - strand at 2383.038 kb on - strand at 2383.157 kb on - strand at 2383.221 kb on - strand at 2383.350 kb on - strand, within Dsui_2239 at 2383.356 kb on - strand, within Dsui_2239 at 2383.373 kb on - strand, within Dsui_2239 at 2383.475 kb on + strand at 2383.483 kb on - strand, within Dsui_2239 at 2383.483 kb on - strand, within Dsui_2239 at 2383.483 kb on - strand, within Dsui_2239 at 2383.515 kb on + strand at 2383.523 kb on - strand, within Dsui_2239 at 2383.788 kb on - strand, within Dsui_2239 at 2383.801 kb on + strand at 2383.977 kb on + strand at 2384.133 kb on + strand at 2384.365 kb on + strand at 2384.447 kb on + strand at 2384.525 kb on + strand at 2384.532 kb on - strand at 2384.533 kb on - strand at 2384.561 kb on + strand at 2384.637 kb on - strand at 2384.701 kb on + strand at 2384.775 kb on + strand at 2385.067 kb on - strand at 2385.240 kb on - strand at 2385.263 kb on + strand at 2385.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,382,327 + Dsui_2238 0.74 -1.2 2,382,382 + +0.8 2,382,412 + Dsui_2238 0.79 -1.2 2,382,527 - +1.8 2,382,531 - Dsui_2238 0.87 -0.8 2,382,562 + +0.8 2,382,782 - +0.8 2,382,936 + +0.8 2,383,038 - -1.5 2,383,038 - -1.5 2,383,038 - +0.8 2,383,157 - +1.2 2,383,221 - -0.1 2,383,350 - Dsui_2239 0.14 -0.2 2,383,356 - Dsui_2239 0.14 +0.2 2,383,373 - Dsui_2239 0.16 +0.9 2,383,475 + -1.2 2,383,483 - Dsui_2239 0.26 +2.5 2,383,483 - Dsui_2239 0.26 +0.7 2,383,483 - Dsui_2239 0.26 -0.2 2,383,515 + +0.8 2,383,523 - Dsui_2239 0.30 -0.6 2,383,788 - Dsui_2239 0.54 +1.2 2,383,801 + -0.8 2,383,977 + +0.8 2,384,133 + -1.2 2,384,365 + -0.8 2,384,447 + -0.2 2,384,525 + +0.8 2,384,532 - -1.2 2,384,533 - -0.8 2,384,561 + -0.2 2,384,637 - -0.8 2,384,701 + +0.8 2,384,775 + +0.8 2,385,067 - -0.8 2,385,240 - -0.2 2,385,263 + -0.8 2,385,277 + +0.8
Or see this region's nucleotide sequence