Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2179 and Dsui_2180 are separated by 78 nucleotides Dsui_2180 and Dsui_2181 are separated by 125 nucleotides Dsui_2181 and Dsui_2182 are separated by 218 nucleotides
Dsui_2179: Dsui_2179 - conserved protein of DIM6/NTAB family, at 2,315,179 to 2,315,745
_2179
Dsui_2180: Dsui_2180 - hypothetical protein, at 2,315,824 to 2,316,072
_2180
Dsui_2181: Dsui_2181 - DNA-binding domain-containing protein, AraC-type, at 2,316,198 to 2,316,983
_2181
Dsui_2182: Dsui_2182 - arabinose efflux permease family protein, at 2,317,202 to 2,318,506
_2182
Position (kb)
2316
2317 Strain fitness (log2 ratio)
-2
-1
0
1 at 2315.214 kb on - strand at 2315.254 kb on + strand, within Dsui_2179 at 2315.313 kb on + strand, within Dsui_2179 at 2315.377 kb on - strand at 2315.404 kb on + strand, within Dsui_2179 at 2315.411 kb on - strand at 2315.412 kb on - strand, within Dsui_2179 at 2315.498 kb on + strand, within Dsui_2179 at 2315.570 kb on + strand at 2315.706 kb on + strand at 2315.734 kb on - strand at 2315.931 kb on + strand at 2316.023 kb on - strand, within Dsui_2180 at 2316.036 kb on + strand at 2316.043 kb on + strand, within Dsui_2180 at 2316.075 kb on - strand at 2316.168 kb on + strand at 2316.278 kb on - strand, within Dsui_2181 at 2316.475 kb on - strand, within Dsui_2181 at 2316.486 kb on - strand, within Dsui_2181 at 2316.535 kb on + strand at 2316.580 kb on - strand, within Dsui_2181 at 2316.742 kb on + strand at 2316.790 kb on + strand, within Dsui_2181 at 2316.818 kb on - strand, within Dsui_2181 at 2316.837 kb on - strand at 2316.853 kb on - strand, within Dsui_2181 at 2316.854 kb on + strand at 2317.207 kb on - strand at 2317.296 kb on + strand at 2317.455 kb on - strand at 2317.543 kb on + strand at 2317.592 kb on + strand, within Dsui_2182 at 2317.706 kb on + strand at 2317.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,315,214 - -2.0 2,315,254 + Dsui_2179 0.13 +0.2 2,315,313 + Dsui_2179 0.24 -0.6 2,315,377 - +1.0 2,315,404 + Dsui_2179 0.40 +0.1 2,315,411 - +1.0 2,315,412 - Dsui_2179 0.41 -1.9 2,315,498 + Dsui_2179 0.56 -0.2 2,315,570 + +1.0 2,315,706 + +0.5 2,315,734 - +1.1 2,315,931 + +0.9 2,316,023 - Dsui_2180 0.80 -0.0 2,316,036 + -0.1 2,316,043 + Dsui_2180 0.88 +0.9 2,316,075 - +0.5 2,316,168 + -0.7 2,316,278 - Dsui_2181 0.10 -1.1 2,316,475 - Dsui_2181 0.35 +0.5 2,316,486 - Dsui_2181 0.37 -0.9 2,316,535 + -0.1 2,316,580 - Dsui_2181 0.49 +1.1 2,316,742 + -0.1 2,316,790 + Dsui_2181 0.75 -1.4 2,316,818 - Dsui_2181 0.79 -0.5 2,316,837 - +0.3 2,316,853 - Dsui_2181 0.83 +0.5 2,316,854 + -0.1 2,317,207 - -0.1 2,317,296 + -0.1 2,317,455 - -1.4 2,317,543 + -0.7 2,317,592 + Dsui_2182 0.30 -1.1 2,317,706 + -0.7 2,317,957 - -0.1
Or see this region's nucleotide sequence