Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2090 and Dsui_2091 overlap by 4 nucleotides Dsui_2091 and Dsui_2092 overlap by 37 nucleotides Dsui_2092 and Dsui_2093 are separated by 130 nucleotides
Dsui_2090: Dsui_2090 - transcriptional regulator, at 2,212,310 to 2,213,251
_2090
Dsui_2091: Dsui_2091 - hypothetical protein, at 2,213,248 to 2,213,385
_2091
Dsui_2092: Dsui_2092 - hypothetical protein, at 2,213,349 to 2,214,350
_2092
Dsui_2093: Dsui_2093 - hypothetical protein, at 2,214,481 to 2,215,341
_2093
Position (kb)
2213
2214
2215 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2212.362 kb on + strand at 2212.394 kb on + strand at 2212.571 kb on + strand, within Dsui_2090 at 2212.589 kb on - strand, within Dsui_2090 at 2212.628 kb on + strand, within Dsui_2090 at 2212.684 kb on + strand, within Dsui_2090 at 2212.887 kb on + strand, within Dsui_2090 at 2212.932 kb on - strand at 2213.380 kb on - strand at 2213.456 kb on - strand, within Dsui_2092 at 2213.470 kb on + strand, within Dsui_2092 at 2213.579 kb on + strand at 2213.712 kb on - strand at 2213.727 kb on - strand at 2214.073 kb on + strand at 2214.484 kb on + strand at 2214.558 kb on - strand at 2214.735 kb on - strand, within Dsui_2093 at 2214.763 kb on - strand, within Dsui_2093 at 2214.837 kb on - strand, within Dsui_2093 at 2215.095 kb on + strand, within Dsui_2093 at 2215.137 kb on + strand, within Dsui_2093 at 2215.278 kb on + strand at 2215.296 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,212,362 + -0.4 2,212,394 + -1.0 2,212,571 + Dsui_2090 0.28 +3.2 2,212,589 - Dsui_2090 0.30 -1.3 2,212,628 + Dsui_2090 0.34 -0.0 2,212,684 + Dsui_2090 0.40 -0.6 2,212,887 + Dsui_2090 0.61 +1.0 2,212,932 - -0.0 2,213,380 - -0.0 2,213,456 - Dsui_2092 0.11 +1.0 2,213,470 + Dsui_2092 0.12 -0.6 2,213,579 + -0.0 2,213,712 - +1.0 2,213,727 - +1.0 2,214,073 + -0.0 2,214,484 + -0.0 2,214,558 - +1.0 2,214,735 - Dsui_2093 0.30 -0.6 2,214,763 - Dsui_2093 0.33 -1.8 2,214,837 - Dsui_2093 0.41 -0.6 2,215,095 + Dsui_2093 0.71 -0.0 2,215,137 + Dsui_2093 0.76 -0.0 2,215,278 + -0.0 2,215,296 + -0.0
Or see this region's nucleotide sequence