Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2079 and Dsui_2080 overlap by 4 nucleotides Dsui_2080 and Dsui_2081 are separated by 6 nucleotides
Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745
_2079
Dsui_2080: Dsui_2080 - response regulator, at 2,200,742 to 2,201,386
_2080
Dsui_2081: Dsui_2081 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,201,393 to 2,202,961
_2081
Position (kb)
2200
2201
2202 Strain fitness (log2 ratio)
-2
-1
0
1 at 2199.755 kb on + strand, within Dsui_2079 at 2199.786 kb on + strand at 2199.922 kb on + strand, within Dsui_2079 at 2199.955 kb on + strand, within Dsui_2079 at 2199.955 kb on + strand, within Dsui_2079 at 2199.967 kb on + strand, within Dsui_2079 at 2200.072 kb on - strand at 2200.303 kb on + strand at 2200.313 kb on + strand, within Dsui_2079 at 2200.495 kb on - strand, within Dsui_2079 at 2200.541 kb on + strand, within Dsui_2079 at 2200.546 kb on + strand at 2200.554 kb on + strand, within Dsui_2079 at 2200.606 kb on + strand at 2200.608 kb on - strand at 2200.681 kb on + strand at 2200.692 kb on + strand at 2200.814 kb on - strand at 2200.827 kb on - strand at 2200.827 kb on - strand, within Dsui_2080 at 2200.841 kb on + strand, within Dsui_2080 at 2200.971 kb on - strand, within Dsui_2080 at 2201.044 kb on + strand, within Dsui_2080 at 2201.081 kb on + strand, within Dsui_2080 at 2201.109 kb on - strand at 2201.228 kb on + strand at 2201.293 kb on - strand, within Dsui_2080 at 2201.687 kb on - strand, within Dsui_2081 at 2201.692 kb on - strand, within Dsui_2081 at 2201.735 kb on - strand, within Dsui_2081 at 2201.806 kb on + strand at 2201.872 kb on + strand, within Dsui_2081 at 2201.916 kb on - strand at 2201.997 kb on + strand, within Dsui_2081 at 2202.071 kb on + strand at 2202.083 kb on + strand at 2202.083 kb on + strand, within Dsui_2081 at 2202.191 kb on - strand, within Dsui_2081 at 2202.191 kb on - strand, within Dsui_2081 at 2202.223 kb on + strand at 2202.231 kb on - strand, within Dsui_2081 at 2202.255 kb on + strand, within Dsui_2081 at 2202.290 kb on + strand at 2202.319 kb on - strand, within Dsui_2081 at 2202.342 kb on - strand, within Dsui_2081 at 2202.354 kb on + strand, within Dsui_2081
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,199,755 + Dsui_2079 0.46 -0.6 2,199,786 + -0.0 2,199,922 + Dsui_2079 0.55 -0.0 2,199,955 + Dsui_2079 0.57 +1.0 2,199,955 + Dsui_2079 0.57 -0.0 2,199,967 + Dsui_2079 0.58 +1.0 2,200,072 - -0.6 2,200,303 + +1.0 2,200,313 + Dsui_2079 0.76 -0.6 2,200,495 - Dsui_2079 0.86 -1.0 2,200,541 + Dsui_2079 0.89 -0.4 2,200,546 + +1.0 2,200,554 + Dsui_2079 0.90 -0.6 2,200,606 + +1.0 2,200,608 - -1.0 2,200,681 + +1.0 2,200,692 + -0.6 2,200,814 - +1.0 2,200,827 - -1.0 2,200,827 - Dsui_2080 0.13 -1.0 2,200,841 + Dsui_2080 0.15 -0.0 2,200,971 - Dsui_2080 0.36 -1.6 2,201,044 + Dsui_2080 0.47 -0.4 2,201,081 + Dsui_2080 0.53 -0.6 2,201,109 - -1.0 2,201,228 + +1.0 2,201,293 - Dsui_2080 0.85 -0.6 2,201,687 - Dsui_2081 0.19 -1.0 2,201,692 - Dsui_2081 0.19 +1.0 2,201,735 - Dsui_2081 0.22 -2.3 2,201,806 + -0.0 2,201,872 + Dsui_2081 0.31 -0.0 2,201,916 - -0.0 2,201,997 + Dsui_2081 0.38 -0.0 2,202,071 + -1.4 2,202,083 + -0.0 2,202,083 + Dsui_2081 0.44 +0.4 2,202,191 - Dsui_2081 0.51 +1.0 2,202,191 - Dsui_2081 0.51 +0.7 2,202,223 + +1.0 2,202,231 - Dsui_2081 0.53 -1.4 2,202,255 + Dsui_2081 0.55 -0.0 2,202,290 + +1.0 2,202,319 - Dsui_2081 0.59 -0.0 2,202,342 - Dsui_2081 0.60 +1.0 2,202,354 + Dsui_2081 0.61 -0.6
Or see this region's nucleotide sequence