Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2070 and Dsui_2071 are separated by 164 nucleotides Dsui_2071 and Dsui_2072 are separated by 134 nucleotides Dsui_2072 and Dsui_2073 are separated by 153 nucleotides Dsui_2073 and Dsui_2074 are separated by 218 nucleotides
Dsui_2070: Dsui_2070 - transcriptional regulator, at 2,188,941 to 2,189,882
_2070
Dsui_2071: Dsui_2071 - acyl carrier protein phosphodiesterase, at 2,190,047 to 2,190,646
_2071
Dsui_2072: Dsui_2072 - Pirin-related protein, at 2,190,781 to 2,191,698
_2072
Dsui_2073: Dsui_2073 - Uncharacterized protein conserved in bacteria (DUF2242), at 2,191,852 to 2,192,358
_2073
Dsui_2074: Dsui_2074 - phasin family protein, at 2,192,577 to 2,192,972
_2074
Position (kb)
2190
2191
2192 Strain fitness (log2 ratio)
-2
-1
0
1 at 2189.793 kb on + strand at 2189.847 kb on - strand at 2189.857 kb on - strand at 2190.000 kb on + strand at 2190.015 kb on + strand at 2190.023 kb on + strand at 2190.217 kb on - strand at 2190.243 kb on + strand, within Dsui_2071 at 2190.243 kb on + strand at 2190.251 kb on - strand, within Dsui_2071 at 2190.288 kb on + strand at 2190.314 kb on + strand, within Dsui_2071 at 2190.495 kb on + strand at 2190.620 kb on + strand at 2190.787 kb on + strand at 2191.082 kb on - strand at 2191.369 kb on - strand, within Dsui_2072 at 2191.434 kb on + strand at 2191.454 kb on + strand at 2191.454 kb on + strand, within Dsui_2072 at 2191.454 kb on + strand, within Dsui_2072 at 2191.454 kb on + strand, within Dsui_2072 at 2191.462 kb on - strand at 2191.496 kb on - strand, within Dsui_2072 at 2191.552 kb on + strand, within Dsui_2072 at 2191.575 kb on + strand, within Dsui_2072 at 2191.599 kb on + strand, within Dsui_2072 at 2191.619 kb on + strand at 2191.780 kb on + strand at 2192.118 kb on + strand at 2192.212 kb on + strand at 2192.439 kb on + strand at 2192.525 kb on + strand at 2192.651 kb on + strand at 2192.676 kb on + strand, within Dsui_2074
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,189,793 + -0.0 2,189,847 - +0.4 2,189,857 - -1.0 2,190,000 + -0.0 2,190,015 + +1.0 2,190,023 + -0.0 2,190,217 - +1.0 2,190,243 + Dsui_2071 0.33 -0.0 2,190,243 + +1.0 2,190,251 - Dsui_2071 0.34 -1.0 2,190,288 + +1.0 2,190,314 + Dsui_2071 0.45 -1.8 2,190,495 + +1.0 2,190,620 + -0.0 2,190,787 + -0.0 2,191,082 - -0.0 2,191,369 - Dsui_2072 0.64 -1.3 2,191,434 + +1.0 2,191,454 + +1.0 2,191,454 + Dsui_2072 0.73 -1.6 2,191,454 + Dsui_2072 0.73 -0.0 2,191,454 + Dsui_2072 0.73 -2.2 2,191,462 - -0.6 2,191,496 - Dsui_2072 0.78 -0.0 2,191,552 + Dsui_2072 0.84 -0.6 2,191,575 + Dsui_2072 0.86 -0.6 2,191,599 + Dsui_2072 0.89 -0.0 2,191,619 + -0.0 2,191,780 + -1.0 2,192,118 + +1.0 2,192,212 + +1.0 2,192,439 + +1.0 2,192,525 + -0.0 2,192,651 + +1.0 2,192,676 + Dsui_2074 0.25 -2.2
Or see this region's nucleotide sequence