Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2058 and Dsui_2059 overlap by 4 nucleotides Dsui_2059 and Dsui_2060 overlap by 1 nucleotides Dsui_2060 and Dsui_2061 are separated by 87 nucleotides
Dsui_2058: Dsui_2058 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,177,354 to 2,178,136
_2058
Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996
_2059
Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877
_2060
Dsui_2061: Dsui_2061 - ABC-type branched-chain amino acid transport system, periplasmic component, at 2,179,965 to 2,181,119
_2061
Position (kb)
2178
2179
2180 Strain fitness (log2 ratio)
-1
0
1
2 at 2178.017 kb on - strand, within Dsui_2058 at 2178.144 kb on - strand at 2178.146 kb on + strand at 2178.200 kb on + strand at 2178.299 kb on - strand, within Dsui_2059 at 2178.299 kb on - strand, within Dsui_2059 at 2178.334 kb on + strand, within Dsui_2059 at 2178.707 kb on - strand, within Dsui_2059 at 2178.728 kb on - strand, within Dsui_2059 at 2178.883 kb on + strand, within Dsui_2059 at 2179.198 kb on + strand, within Dsui_2060 at 2179.410 kb on - strand, within Dsui_2060 at 2179.723 kb on + strand, within Dsui_2060 at 2179.774 kb on + strand, within Dsui_2060 at 2179.960 kb on + strand at 2179.996 kb on + strand at 2180.115 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.296 kb on - strand, within Dsui_2061 at 2180.326 kb on + strand, within Dsui_2061 at 2180.362 kb on - strand, within Dsui_2061 at 2180.405 kb on + strand, within Dsui_2061 at 2180.415 kb on - strand, within Dsui_2061 at 2180.447 kb on + strand at 2180.457 kb on + strand, within Dsui_2061 at 2180.479 kb on + strand, within Dsui_2061 at 2180.487 kb on - strand, within Dsui_2061 at 2180.498 kb on - strand, within Dsui_2061 at 2180.819 kb on + strand, within Dsui_2061 at 2180.827 kb on - strand, within Dsui_2061 at 2180.827 kb on - strand, within Dsui_2061
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,178,017 - Dsui_2058 0.85 +1.3 2,178,144 - +1.0 2,178,146 + -0.0 2,178,200 + +0.0 2,178,299 - Dsui_2059 0.19 +1.4 2,178,299 - Dsui_2059 0.19 +0.3 2,178,334 + Dsui_2059 0.23 +0.0 2,178,707 - Dsui_2059 0.66 +1.8 2,178,728 - Dsui_2059 0.69 +0.4 2,178,883 + Dsui_2059 0.87 -0.6 2,179,198 + Dsui_2060 0.23 +1.0 2,179,410 - Dsui_2060 0.47 +0.2 2,179,723 + Dsui_2060 0.82 -0.0 2,179,774 + Dsui_2060 0.88 +1.0 2,179,960 + +1.0 2,179,996 + -0.2 2,180,115 - Dsui_2061 0.13 +0.2 2,180,244 - Dsui_2061 0.24 -0.0 2,180,244 - Dsui_2061 0.24 +1.0 2,180,244 - Dsui_2061 0.24 +0.1 2,180,296 - Dsui_2061 0.29 +1.3 2,180,326 + Dsui_2061 0.31 +1.0 2,180,362 - Dsui_2061 0.34 +1.7 2,180,405 + Dsui_2061 0.38 -0.0 2,180,415 - Dsui_2061 0.39 +0.1 2,180,447 + -0.6 2,180,457 + Dsui_2061 0.43 +1.0 2,180,479 + Dsui_2061 0.45 -1.0 2,180,487 - Dsui_2061 0.45 +0.2 2,180,498 - Dsui_2061 0.46 +1.0 2,180,819 + Dsui_2061 0.74 -0.0 2,180,827 - Dsui_2061 0.75 +1.0 2,180,827 - Dsui_2061 0.75 +0.9
Or see this region's nucleotide sequence