Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2025 and Dsui_2026 are separated by 9 nucleotides Dsui_2026 and Dsui_2027 are separated by 17 nucleotides
Dsui_2025: Dsui_2025 - RND family efflux transporter, MFP subunit, at 2,141,088 to 2,142,275
_2025
Dsui_2026: Dsui_2026 - hydrophobe/amphiphile efflux-1 (HAE1) family transporter, at 2,142,285 to 2,145,482
_2026
Dsui_2027: Dsui_2027 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 2,145,500 to 2,147,065
_2027
Position (kb)
2142
2143
2144
2145
2146 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2141.296 kb on + strand, within Dsui_2025 at 2141.381 kb on + strand at 2141.401 kb on - strand at 2141.475 kb on + strand, within Dsui_2025 at 2141.577 kb on - strand, within Dsui_2025 at 2141.598 kb on - strand, within Dsui_2025 at 2141.599 kb on - strand at 2141.665 kb on + strand, within Dsui_2025 at 2141.673 kb on - strand at 2141.710 kb on + strand at 2141.755 kb on + strand, within Dsui_2025 at 2141.885 kb on - strand at 2141.961 kb on + strand, within Dsui_2025 at 2142.008 kb on + strand, within Dsui_2025 at 2142.008 kb on + strand, within Dsui_2025 at 2142.269 kb on + strand at 2142.269 kb on + strand at 2142.278 kb on - strand at 2142.329 kb on + strand at 2142.335 kb on + strand at 2142.402 kb on - strand at 2142.430 kb on + strand at 2142.448 kb on + strand at 2142.535 kb on - strand at 2142.609 kb on + strand at 2142.693 kb on + strand at 2142.700 kb on + strand, within Dsui_2026 at 2142.700 kb on + strand at 2142.702 kb on - strand, within Dsui_2026 at 2142.742 kb on + strand at 2142.757 kb on + strand at 2142.913 kb on + strand, within Dsui_2026 at 2143.209 kb on - strand, within Dsui_2026 at 2143.249 kb on + strand at 2143.249 kb on + strand, within Dsui_2026 at 2143.270 kb on + strand, within Dsui_2026 at 2143.314 kb on + strand, within Dsui_2026 at 2143.322 kb on - strand at 2143.488 kb on + strand, within Dsui_2026 at 2143.727 kb on + strand at 2143.744 kb on + strand, within Dsui_2026 at 2143.939 kb on + strand, within Dsui_2026 at 2143.993 kb on + strand at 2144.014 kb on + strand at 2144.022 kb on - strand, within Dsui_2026 at 2144.042 kb on + strand, within Dsui_2026 at 2144.063 kb on - strand at 2144.089 kb on + strand, within Dsui_2026 at 2144.330 kb on + strand at 2144.386 kb on - strand, within Dsui_2026 at 2144.396 kb on - strand, within Dsui_2026 at 2144.493 kb on + strand, within Dsui_2026 at 2144.532 kb on - strand at 2144.572 kb on + strand at 2144.572 kb on + strand, within Dsui_2026 at 2144.572 kb on + strand, within Dsui_2026 at 2144.572 kb on + strand at 2144.621 kb on + strand at 2144.623 kb on - strand at 2144.629 kb on - strand at 2144.696 kb on + strand, within Dsui_2026 at 2144.859 kb on - strand, within Dsui_2026 at 2144.876 kb on + strand at 2144.935 kb on - strand, within Dsui_2026 at 2145.097 kb on + strand, within Dsui_2026 at 2145.176 kb on - strand at 2145.326 kb on + strand at 2145.329 kb on - strand at 2145.343 kb on + strand at 2145.397 kb on + strand at 2145.409 kb on - strand at 2145.471 kb on - strand at 2145.490 kb on + strand at 2145.538 kb on + strand at 2145.633 kb on + strand at 2145.734 kb on + strand at 2145.768 kb on - strand, within Dsui_2027 at 2145.790 kb on + strand, within Dsui_2027 at 2145.798 kb on - strand at 2145.894 kb on - strand at 2146.116 kb on - strand at 2146.130 kb on - strand at 2146.143 kb on + strand at 2146.151 kb on - strand at 2146.199 kb on + strand at 2146.450 kb on + strand, within Dsui_2027
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,141,296 + Dsui_2025 0.18 -1.7 2,141,381 + +0.1 2,141,401 - +1.1 2,141,475 + Dsui_2025 0.33 -2.1 2,141,577 - Dsui_2025 0.41 -0.9 2,141,598 - Dsui_2025 0.43 +0.1 2,141,599 - +1.1 2,141,665 + Dsui_2025 0.49 -1.3 2,141,673 - +1.1 2,141,710 + +1.1 2,141,755 + Dsui_2025 0.56 +1.1 2,141,885 - +1.1 2,141,961 + Dsui_2025 0.73 +1.1 2,142,008 + Dsui_2025 0.77 +1.1 2,142,008 + Dsui_2025 0.77 +1.1 2,142,269 + -0.9 2,142,269 + +0.1 2,142,278 - +0.1 2,142,329 + +0.1 2,142,335 + +1.1 2,142,402 - +0.1 2,142,430 + +0.1 2,142,448 + -0.9 2,142,535 - +1.1 2,142,609 + +1.1 2,142,693 + +0.1 2,142,700 + Dsui_2026 0.13 +0.1 2,142,700 + +0.1 2,142,702 - Dsui_2026 0.13 -0.5 2,142,742 + +1.1 2,142,757 + +1.1 2,142,913 + Dsui_2026 0.20 +1.1 2,143,209 - Dsui_2026 0.29 +0.1 2,143,249 + +0.1 2,143,249 + Dsui_2026 0.30 -0.2 2,143,270 + Dsui_2026 0.31 +1.1 2,143,314 + Dsui_2026 0.32 -0.9 2,143,322 - +1.1 2,143,488 + Dsui_2026 0.38 -0.9 2,143,727 + +0.1 2,143,744 + Dsui_2026 0.46 -0.9 2,143,939 + Dsui_2026 0.52 -0.9 2,143,993 + +1.1 2,144,014 + +0.1 2,144,022 - Dsui_2026 0.54 -1.5 2,144,042 + Dsui_2026 0.55 +0.1 2,144,063 - +0.1 2,144,089 + Dsui_2026 0.56 +1.1 2,144,330 + +1.1 2,144,386 - Dsui_2026 0.66 +0.5 2,144,396 - Dsui_2026 0.66 +0.5 2,144,493 + Dsui_2026 0.69 +1.1 2,144,532 - +1.1 2,144,572 + +1.1 2,144,572 + Dsui_2026 0.72 -0.9 2,144,572 + Dsui_2026 0.72 -0.9 2,144,572 + +0.1 2,144,621 + +1.1 2,144,623 - +0.1 2,144,629 - +1.1 2,144,696 + Dsui_2026 0.75 +1.1 2,144,859 - Dsui_2026 0.80 +1.1 2,144,876 + +1.1 2,144,935 - Dsui_2026 0.83 +1.1 2,145,097 + Dsui_2026 0.88 -0.3 2,145,176 - +1.1 2,145,326 + +1.1 2,145,329 - +0.1 2,145,343 + -1.5 2,145,397 + +1.1 2,145,409 - +1.1 2,145,471 - +1.1 2,145,490 + +0.1 2,145,538 + +0.1 2,145,633 + +0.1 2,145,734 + +0.1 2,145,768 - Dsui_2027 0.17 -1.3 2,145,790 + Dsui_2027 0.19 -2.9 2,145,798 - +1.1 2,145,894 - +0.1 2,146,116 - -0.5 2,146,130 - +1.1 2,146,143 + +1.1 2,146,151 - +1.1 2,146,199 + +1.1 2,146,450 + Dsui_2027 0.61 -0.9
Or see this region's nucleotide sequence