Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1968 and Dsui_1969 overlap by 1 nucleotides Dsui_1969 and Dsui_1970 overlap by 4 nucleotides Dsui_1970 and Dsui_1971 are separated by 10 nucleotides
Dsui_1968: Dsui_1968 - 5''/3''-nucleotidase SurE, at 2,076,462 to 2,077,202
_1968
Dsui_1969: Dsui_1969 - protein-L-isoaspartate and D-aspartate O-methyltransferase, at 2,077,202 to 2,077,876
_1969
Dsui_1970: Dsui_1970 - metalloendopeptidase-like membrane protein, at 2,077,873 to 2,078,781
_1970
Dsui_1971: Dsui_1971 - RNA polymerase sigma factor RpoS, at 2,078,792 to 2,079,778
_1971
Position (kb)
2077
2078
2079 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2076.942 kb on - strand, within Dsui_1968 at 2076.966 kb on - strand, within Dsui_1968 at 2076.966 kb on - strand, within Dsui_1968 at 2076.986 kb on - strand, within Dsui_1968 at 2077.001 kb on + strand, within Dsui_1968 at 2077.001 kb on + strand, within Dsui_1968 at 2077.009 kb on - strand, within Dsui_1968 at 2077.063 kb on + strand, within Dsui_1968 at 2077.066 kb on - strand, within Dsui_1968 at 2077.071 kb on - strand, within Dsui_1968 at 2077.116 kb on + strand, within Dsui_1968 at 2077.121 kb on + strand, within Dsui_1968 at 2077.124 kb on - strand, within Dsui_1968 at 2077.129 kb on - strand at 2077.129 kb on - strand at 2077.132 kb on + strand at 2077.174 kb on + strand at 2077.177 kb on - strand at 2077.265 kb on - strand at 2077.345 kb on + strand, within Dsui_1969 at 2077.346 kb on + strand, within Dsui_1969 at 2077.361 kb on + strand, within Dsui_1969 at 2077.372 kb on - strand, within Dsui_1969 at 2077.419 kb on - strand, within Dsui_1969 at 2077.441 kb on + strand, within Dsui_1969 at 2077.441 kb on + strand, within Dsui_1969 at 2077.452 kb on + strand, within Dsui_1969 at 2077.452 kb on + strand, within Dsui_1969 at 2077.460 kb on - strand, within Dsui_1969 at 2077.460 kb on - strand, within Dsui_1969 at 2077.539 kb on - strand, within Dsui_1969 at 2077.549 kb on + strand, within Dsui_1969 at 2077.557 kb on - strand, within Dsui_1969 at 2077.752 kb on + strand, within Dsui_1969 at 2077.808 kb on + strand, within Dsui_1969 at 2077.869 kb on - strand at 2077.907 kb on + strand at 2077.972 kb on + strand, within Dsui_1970 at 2077.989 kb on + strand, within Dsui_1970 at 2078.056 kb on + strand, within Dsui_1970 at 2078.078 kb on + strand, within Dsui_1970 at 2078.305 kb on - strand, within Dsui_1970 at 2078.307 kb on + strand, within Dsui_1970 at 2078.307 kb on + strand, within Dsui_1970 at 2078.307 kb on + strand, within Dsui_1970 at 2078.315 kb on - strand, within Dsui_1970 at 2078.482 kb on + strand, within Dsui_1970 at 2078.539 kb on + strand, within Dsui_1970 at 2078.573 kb on - strand at 2078.585 kb on - strand, within Dsui_1970 at 2078.645 kb on + strand, within Dsui_1970 at 2078.663 kb on + strand, within Dsui_1970 at 2078.775 kb on + strand at 2078.784 kb on + strand at 2078.784 kb on + strand at 2078.784 kb on + strand at 2078.784 kb on + strand at 2078.869 kb on - strand at 2078.869 kb on - strand at 2078.872 kb on + strand at 2079.030 kb on - strand, within Dsui_1971 at 2079.035 kb on - strand, within Dsui_1971 at 2079.069 kb on + strand, within Dsui_1971 at 2079.077 kb on - strand, within Dsui_1971 at 2079.085 kb on + strand, within Dsui_1971 at 2079.097 kb on + strand, within Dsui_1971 at 2079.147 kb on + strand, within Dsui_1971 at 2079.148 kb on + strand, within Dsui_1971 at 2079.155 kb on - strand at 2079.185 kb on + strand, within Dsui_1971 at 2079.209 kb on - strand, within Dsui_1971 at 2079.227 kb on + strand, within Dsui_1971 at 2079.345 kb on + strand, within Dsui_1971 at 2079.353 kb on - strand, within Dsui_1971 at 2079.377 kb on + strand, within Dsui_1971 at 2079.415 kb on - strand, within Dsui_1971 at 2079.458 kb on - strand, within Dsui_1971 at 2079.480 kb on + strand, within Dsui_1971 at 2079.488 kb on + strand, within Dsui_1971 at 2079.496 kb on - strand, within Dsui_1971 at 2079.574 kb on - strand, within Dsui_1971 at 2079.584 kb on - strand, within Dsui_1971 at 2079.635 kb on - strand, within Dsui_1971 at 2079.703 kb on + strand at 2079.709 kb on + strand at 2079.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,076,942 - Dsui_1968 0.65 +1.1 2,076,966 - Dsui_1968 0.68 +1.1 2,076,966 - Dsui_1968 0.68 +1.1 2,076,986 - Dsui_1968 0.71 +1.1 2,077,001 + Dsui_1968 0.73 +3.3 2,077,001 + Dsui_1968 0.73 +3.4 2,077,009 - Dsui_1968 0.74 +0.1 2,077,063 + Dsui_1968 0.81 +3.4 2,077,066 - Dsui_1968 0.82 +1.1 2,077,071 - Dsui_1968 0.82 -0.4 2,077,116 + Dsui_1968 0.88 +3.9 2,077,121 + Dsui_1968 0.89 +3.3 2,077,124 - Dsui_1968 0.89 -0.9 2,077,129 - -1.2 2,077,129 - +1.1 2,077,132 + +3.1 2,077,174 + +3.9 2,077,177 - +1.1 2,077,265 - +1.1 2,077,345 + Dsui_1969 0.21 +0.6 2,077,346 + Dsui_1969 0.21 +0.1 2,077,361 + Dsui_1969 0.24 +0.4 2,077,372 - Dsui_1969 0.25 +0.1 2,077,419 - Dsui_1969 0.32 +0.6 2,077,441 + Dsui_1969 0.35 +0.7 2,077,441 + Dsui_1969 0.35 +0.8 2,077,452 + Dsui_1969 0.37 +1.2 2,077,452 + Dsui_1969 0.37 +0.6 2,077,460 - Dsui_1969 0.38 +1.1 2,077,460 - Dsui_1969 0.38 +1.1 2,077,539 - Dsui_1969 0.50 +1.1 2,077,549 + Dsui_1969 0.51 +0.6 2,077,557 - Dsui_1969 0.53 -0.4 2,077,752 + Dsui_1969 0.81 +0.7 2,077,808 + Dsui_1969 0.90 +0.6 2,077,869 - +1.1 2,077,907 + -1.9 2,077,972 + Dsui_1970 0.11 -3.0 2,077,989 + Dsui_1970 0.13 -1.0 2,078,056 + Dsui_1970 0.20 -1.9 2,078,078 + Dsui_1970 0.23 -2.7 2,078,305 - Dsui_1970 0.48 +1.1 2,078,307 + Dsui_1970 0.48 -4.4 2,078,307 + Dsui_1970 0.48 -1.5 2,078,307 + Dsui_1970 0.48 -3.5 2,078,315 - Dsui_1970 0.49 +0.1 2,078,482 + Dsui_1970 0.67 -3.3 2,078,539 + Dsui_1970 0.73 -2.8 2,078,573 - +1.1 2,078,585 - Dsui_1970 0.78 -0.9 2,078,645 + Dsui_1970 0.85 -1.7 2,078,663 + Dsui_1970 0.87 -2.7 2,078,775 + -0.0 2,078,784 + +0.2 2,078,784 + +0.4 2,078,784 + +0.1 2,078,784 + +0.4 2,078,869 - -0.2 2,078,869 - +1.1 2,078,872 + +0.1 2,079,030 - Dsui_1971 0.24 +2.9 2,079,035 - Dsui_1971 0.25 -0.5 2,079,069 + Dsui_1971 0.28 +0.9 2,079,077 - Dsui_1971 0.29 +1.1 2,079,085 + Dsui_1971 0.30 +0.8 2,079,097 + Dsui_1971 0.31 +0.4 2,079,147 + Dsui_1971 0.36 +0.2 2,079,148 + Dsui_1971 0.36 +0.0 2,079,155 - +1.1 2,079,185 + Dsui_1971 0.40 +1.0 2,079,209 - Dsui_1971 0.42 +1.1 2,079,227 + Dsui_1971 0.44 +0.5 2,079,345 + Dsui_1971 0.56 +0.9 2,079,353 - Dsui_1971 0.57 +0.1 2,079,377 + Dsui_1971 0.59 +0.0 2,079,415 - Dsui_1971 0.63 -1.9 2,079,458 - Dsui_1971 0.67 +1.7 2,079,480 + Dsui_1971 0.70 -0.0 2,079,488 + Dsui_1971 0.71 +0.0 2,079,496 - Dsui_1971 0.71 -1.2 2,079,574 - Dsui_1971 0.79 +0.3 2,079,584 - Dsui_1971 0.80 -1.5 2,079,635 - Dsui_1971 0.85 +0.0 2,079,703 + +0.8 2,079,709 + +0.1 2,079,725 - +0.6
Or see this region's nucleotide sequence