Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1916 and Dsui_1917 are separated by 21 nucleotides Dsui_1917 and Dsui_1918 are separated by 96 nucleotides Dsui_1918 and Dsui_1919 are separated by 210 nucleotides
Dsui_1916: Dsui_1916 - cytochrome d oxidase cyd, subunit II, at 2,018,447 to 2,019,586
_1916
Dsui_1917: Dsui_1917 - cyd operon protein YbgT, at 2,019,608 to 2,019,703
_1917
Dsui_1918: Dsui_1918 - TIGR03549 family protein, at 2,019,800 to 2,022,013
_1918
Dsui_1919: Dsui_1919 - Mg chelatase, cobalamin biosynthesis protein CobN, at 2,022,224 to 2,026,201
_1919
Position (kb)
2019
2020
2021
2022
2023 Strain fitness (log2 ratio)
-1
0
1
2 at 2018.834 kb on + strand at 2018.848 kb on - strand, within Dsui_1916 at 2018.929 kb on + strand, within Dsui_1916 at 2019.042 kb on - strand, within Dsui_1916 at 2019.105 kb on + strand, within Dsui_1916 at 2019.249 kb on + strand, within Dsui_1916 at 2019.259 kb on + strand, within Dsui_1916 at 2019.342 kb on + strand at 2019.396 kb on + strand at 2019.404 kb on - strand at 2019.414 kb on - strand at 2019.414 kb on - strand at 2019.471 kb on + strand, within Dsui_1916 at 2019.568 kb on + strand at 2019.576 kb on - strand at 2019.896 kb on + strand at 2019.909 kb on - strand at 2019.931 kb on + strand at 2020.073 kb on + strand, within Dsui_1918 at 2020.179 kb on - strand, within Dsui_1918 at 2020.198 kb on - strand, within Dsui_1918 at 2020.198 kb on - strand, within Dsui_1918 at 2020.316 kb on - strand, within Dsui_1918 at 2020.372 kb on + strand at 2020.444 kb on + strand, within Dsui_1918 at 2020.841 kb on - strand, within Dsui_1918 at 2020.861 kb on - strand, within Dsui_1918 at 2020.999 kb on - strand, within Dsui_1918 at 2021.041 kb on + strand, within Dsui_1918 at 2021.041 kb on + strand at 2021.049 kb on - strand, within Dsui_1918 at 2021.080 kb on - strand, within Dsui_1918 at 2021.080 kb on - strand, within Dsui_1918 at 2021.154 kb on + strand at 2021.163 kb on - strand, within Dsui_1918 at 2021.163 kb on - strand, within Dsui_1918 at 2021.274 kb on - strand, within Dsui_1918 at 2021.281 kb on - strand, within Dsui_1918 at 2021.309 kb on - strand, within Dsui_1918 at 2021.316 kb on + strand, within Dsui_1918 at 2021.324 kb on - strand, within Dsui_1918 at 2021.324 kb on - strand, within Dsui_1918 at 2021.599 kb on + strand at 2021.608 kb on - strand, within Dsui_1918 at 2021.691 kb on - strand, within Dsui_1918 at 2021.843 kb on - strand at 2021.869 kb on + strand at 2021.927 kb on - strand at 2022.071 kb on + strand at 2022.158 kb on - strand at 2022.281 kb on + strand at 2022.568 kb on + strand at 2022.678 kb on + strand at 2022.704 kb on + strand, within Dsui_1919 at 2022.826 kb on + strand, within Dsui_1919 at 2022.898 kb on - strand at 2022.912 kb on + strand, within Dsui_1919
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 2,018,834 + +1.0 2,018,848 - Dsui_1916 0.35 -0.5 2,018,929 + Dsui_1916 0.42 -1.3 2,019,042 - Dsui_1916 0.52 +1.0 2,019,105 + Dsui_1916 0.58 +0.0 2,019,249 + Dsui_1916 0.70 -1.0 2,019,259 + Dsui_1916 0.71 +0.0 2,019,342 + +1.0 2,019,396 + -0.5 2,019,404 - +1.0 2,019,414 - +1.0 2,019,414 - +1.0 2,019,471 + Dsui_1916 0.90 -0.5 2,019,568 + +0.0 2,019,576 - +0.0 2,019,896 + +1.0 2,019,909 - -1.5 2,019,931 + +1.0 2,020,073 + Dsui_1918 0.12 -1.7 2,020,179 - Dsui_1918 0.17 -0.4 2,020,198 - Dsui_1918 0.18 +1.2 2,020,198 - Dsui_1918 0.18 +1.4 2,020,316 - Dsui_1918 0.23 +1.1 2,020,372 + +1.1 2,020,444 + Dsui_1918 0.29 +1.1 2,020,841 - Dsui_1918 0.47 +0.1 2,020,861 - Dsui_1918 0.48 -0.5 2,020,999 - Dsui_1918 0.54 +1.1 2,021,041 + Dsui_1918 0.56 +0.1 2,021,041 + -0.5 2,021,049 - Dsui_1918 0.56 +1.2 2,021,080 - Dsui_1918 0.58 -0.7 2,021,080 - Dsui_1918 0.58 +0.6 2,021,154 + +1.1 2,021,163 - Dsui_1918 0.62 +0.8 2,021,163 - Dsui_1918 0.62 +0.3 2,021,274 - Dsui_1918 0.67 +1.1 2,021,281 - Dsui_1918 0.67 +1.7 2,021,309 - Dsui_1918 0.68 +1.7 2,021,316 + Dsui_1918 0.68 +2.1 2,021,324 - Dsui_1918 0.69 +0.3 2,021,324 - Dsui_1918 0.69 +1.1 2,021,599 + +1.1 2,021,608 - Dsui_1918 0.82 +1.5 2,021,691 - Dsui_1918 0.85 +1.1 2,021,843 - -0.5 2,021,869 + -1.5 2,021,927 - +0.1 2,022,071 + +1.1 2,022,158 - +1.1 2,022,281 + +0.1 2,022,568 + -0.5 2,022,678 + +1.1 2,022,704 + Dsui_1919 0.12 -0.5 2,022,826 + Dsui_1919 0.15 +0.1 2,022,898 - +0.1 2,022,912 + Dsui_1919 0.17 -0.5
Or see this region's nucleotide sequence