Strain Fitness in Dechlorosoma suillum PS around Dsui_1880

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1879 and Dsui_1880 are separated by 206 nucleotidesDsui_1880 and Dsui_1881 are separated by 233 nucleotides Dsui_1879: Dsui_1879 - luciferase family oxidoreductase, group 1, at 1,976,525 to 1,977,526 _1879 Dsui_1880: Dsui_1880 - tRNA-Arg, at 1,977,733 to 1,977,807 _1880 Dsui_1881: Dsui_1881 - methyl-accepting chemotaxis protein, at 1,978,041 to 1,980,077 _1881 Position (kb) 1977 1978Strain fitness (log2 ratio) -1 0 1at 1976.790 kb on + strand, within Dsui_1879at 1976.852 kb on + strandat 1976.931 kb on - strand, within Dsui_1879at 1977.039 kb on + strand, within Dsui_1879at 1977.142 kb on - strandat 1977.162 kb on + strand, within Dsui_1879at 1977.200 kb on + strand, within Dsui_1879at 1977.262 kb on + strand, within Dsui_1879at 1977.328 kb on + strandat 1977.329 kb on + strand, within Dsui_1879at 1977.492 kb on + strandat 1977.519 kb on - strandat 1977.522 kb on + strandat 1977.622 kb on - strandat 1977.862 kb on + strandat 1977.862 kb on + strandat 1977.984 kb on + strandat 1977.989 kb on + strandat 1977.989 kb on + strandat 1977.992 kb on - strandat 1977.997 kb on - strandat 1978.003 kb on + strandat 1978.008 kb on - strandat 1978.064 kb on + strandat 1978.099 kb on + strandat 1978.149 kb on - strandat 1978.177 kb on + strandat 1978.196 kb on + strandat 1978.215 kb on + strandat 1978.247 kb on - strandat 1978.292 kb on - strandat 1978.311 kb on + strand, within Dsui_1881at 1978.317 kb on + strand, within Dsui_1881at 1978.365 kb on - strand, within Dsui_1881at 1978.542 kb on + strand, within Dsui_1881at 1978.592 kb on - strand, within Dsui_1881at 1978.608 kb on + strand, within Dsui_1881at 1978.608 kb on + strand, within Dsui_1881at 1978.631 kb on + strand, within Dsui_1881at 1978.692 kb on - strand, within Dsui_1881at 1978.703 kb on + strand, within Dsui_1881at 1978.712 kb on + strand, within Dsui_1881at 1978.720 kb on - strand, within Dsui_1881at 1978.723 kb on + strand, within Dsui_1881

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,976,790 + Dsui_1879 0.26 -0.1
1,976,852 + +0.9
1,976,931 - Dsui_1879 0.41 -0.1
1,977,039 + Dsui_1879 0.51 -0.1
1,977,142 - -0.1
1,977,162 + Dsui_1879 0.64 -1.4
1,977,200 + Dsui_1879 0.67 -0.7
1,977,262 + Dsui_1879 0.74 -0.7
1,977,328 + -1.1
1,977,329 + Dsui_1879 0.80 -1.4
1,977,492 + -0.1
1,977,519 - +0.9
1,977,522 + +0.9
1,977,622 - +0.9
1,977,862 + +0.9
1,977,862 + -0.7
1,977,984 + +0.5
1,977,989 + -0.0
1,977,989 + -0.1
1,977,992 - -0.1
1,977,997 - -0.1
1,978,003 + -0.2
1,978,008 - +0.9
1,978,064 + -0.2
1,978,099 + +0.2
1,978,149 - +1.0
1,978,177 + -0.0
1,978,196 + +0.2
1,978,215 + -0.4
1,978,247 - -0.0
1,978,292 - -0.0
1,978,311 + Dsui_1881 0.13 -0.0
1,978,317 + Dsui_1881 0.14 -0.1
1,978,365 - Dsui_1881 0.16 -0.0
1,978,542 + Dsui_1881 0.25 +0.2
1,978,592 - Dsui_1881 0.27 +1.0
1,978,608 + Dsui_1881 0.28 +0.2
1,978,608 + Dsui_1881 0.28 -0.1
1,978,631 + Dsui_1881 0.29 +0.1
1,978,692 - Dsui_1881 0.32 +1.0
1,978,703 + Dsui_1881 0.32 -0.5
1,978,712 + Dsui_1881 0.33 +0.5
1,978,720 - Dsui_1881 0.33 +1.0
1,978,723 + Dsui_1881 0.33 -0.1

Or see this region's nucleotide sequence