Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1867 and Dsui_1868 are separated by 190 nucleotides Dsui_1868 and Dsui_1869 are separated by 322 nucleotides Dsui_1869 and Dsui_1870 are separated by 130 nucleotides
Dsui_1867: Dsui_1867 - signal transduction histidine kinase, at 1,962,496 to 1,964,172
_1867
Dsui_1868: Dsui_1868 - HD-GYP domain-containing protein, at 1,964,363 to 1,965,607
_1868
Dsui_1869: Dsui_1869 - hypothetical protein, at 1,965,930 to 1,966,208
_1869
Dsui_1870: Dsui_1870 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 1,966,339 to 1,967,841
_1870
Position (kb) 1964
1965
1966 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1963.374 kb on - strand, within Dsui_1867 at 1963.430 kb on - strand at 1963.479 kb on + strand, within Dsui_1867 at 1963.580 kb on + strand, within Dsui_1867 at 1963.580 kb on + strand, within Dsui_1867 at 1963.580 kb on + strand at 1963.613 kb on - strand, within Dsui_1867 at 1963.613 kb on - strand at 1963.720 kb on + strand, within Dsui_1867 at 1963.720 kb on + strand, within Dsui_1867 at 1963.774 kb on + strand at 1963.774 kb on + strand, within Dsui_1867 at 1963.774 kb on + strand at 1963.782 kb on - strand, within Dsui_1867 at 1963.805 kb on - strand, within Dsui_1867 at 1963.961 kb on - strand, within Dsui_1867 at 1964.003 kb on - strand, within Dsui_1867 at 1964.003 kb on - strand, within Dsui_1867 at 1964.081 kb on + strand at 1964.181 kb on + strand at 1964.182 kb on - strand at 1964.354 kb on + strand at 1964.360 kb on + strand at 1964.401 kb on + strand at 1964.535 kb on + strand, within Dsui_1868 at 1964.559 kb on - strand, within Dsui_1868 at 1964.674 kb on - strand, within Dsui_1868 at 1964.812 kb on - strand, within Dsui_1868 at 1964.940 kb on + strand, within Dsui_1868 at 1964.948 kb on - strand at 1964.985 kb on - strand, within Dsui_1868 at 1965.020 kb on - strand, within Dsui_1868 at 1965.024 kb on + strand, within Dsui_1868 at 1965.085 kb on + strand, within Dsui_1868 at 1965.085 kb on + strand, within Dsui_1868 at 1965.200 kb on + strand, within Dsui_1868 at 1965.233 kb on + strand, within Dsui_1868 at 1965.268 kb on + strand, within Dsui_1868 at 1965.277 kb on - strand, within Dsui_1868 at 1965.392 kb on + strand, within Dsui_1868 at 1965.443 kb on - strand at 1965.708 kb on - strand at 1965.712 kb on + strand at 1965.753 kb on - strand at 1965.872 kb on + strand at 1965.920 kb on + strand at 1965.944 kb on + strand at 1965.961 kb on + strand, within Dsui_1869 at 1966.004 kb on + strand, within Dsui_1869 at 1966.083 kb on + strand, within Dsui_1869 at 1966.113 kb on + strand, within Dsui_1869 at 1966.349 kb on + strand at 1966.349 kb on + strand at 1966.432 kb on - strand at 1966.436 kb on + strand at 1966.459 kb on + strand at 1966.468 kb on + strand at 1966.494 kb on + strand, within Dsui_1870 at 1966.564 kb on + strand, within Dsui_1870
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,963,374 - Dsui_1867 0.52 -2.4 1,963,430 - +1.9 1,963,479 + Dsui_1867 0.59 -1.1 1,963,580 + Dsui_1867 0.65 +0.9 1,963,580 + Dsui_1867 0.65 -1.7 1,963,580 + +0.9 1,963,613 - Dsui_1867 0.67 -1.4 1,963,613 - +0.9 1,963,720 + Dsui_1867 0.73 -1.9 1,963,720 + Dsui_1867 0.73 -1.4 1,963,774 + +0.9 1,963,774 + Dsui_1867 0.76 +0.9 1,963,774 + +0.9 1,963,782 - Dsui_1867 0.77 -0.1 1,963,805 - Dsui_1867 0.78 -0.7 1,963,961 - Dsui_1867 0.87 -1.9 1,964,003 - Dsui_1867 0.90 +0.9 1,964,003 - Dsui_1867 0.90 -0.1 1,964,081 + -0.1 1,964,181 + -0.1 1,964,182 - +0.9 1,964,354 + -1.1 1,964,360 + -1.4 1,964,401 + -0.9 1,964,535 + Dsui_1868 0.14 +1.9 1,964,559 - Dsui_1868 0.16 -1.7 1,964,674 - Dsui_1868 0.25 -2.3 1,964,812 - Dsui_1868 0.36 -1.7 1,964,940 + Dsui_1868 0.46 +0.2 1,964,948 - +0.9 1,964,985 - Dsui_1868 0.50 -1.1 1,965,020 - Dsui_1868 0.53 -0.1 1,965,024 + Dsui_1868 0.53 -0.8 1,965,085 + Dsui_1868 0.58 -0.5 1,965,085 + Dsui_1868 0.58 +0.9 1,965,200 + Dsui_1868 0.67 -0.2 1,965,233 + Dsui_1868 0.70 -0.4 1,965,268 + Dsui_1868 0.73 +0.6 1,965,277 - Dsui_1868 0.73 +0.9 1,965,392 + Dsui_1868 0.83 -2.9 1,965,443 - -0.1 1,965,708 - -0.1 1,965,712 + -0.5 1,965,753 - +0.9 1,965,872 + +0.2 1,965,920 + -0.3 1,965,944 + -0.1 1,965,961 + Dsui_1869 0.11 -0.5 1,966,004 + Dsui_1869 0.27 +0.1 1,966,083 + Dsui_1869 0.55 -0.3 1,966,113 + Dsui_1869 0.66 -0.1 1,966,349 + -2.7 1,966,349 + -1.6 1,966,432 - -1.4 1,966,436 + -2.4 1,966,459 + -1.0 1,966,468 + -0.1 1,966,494 + Dsui_1870 0.10 -3.2 1,966,564 + Dsui_1870 0.15 -4.0
Or see this region's nucleotide sequence