Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1858 and Dsui_1859 are separated by 18 nucleotides Dsui_1859 and Dsui_1860 are separated by 13 nucleotides Dsui_1860 and Dsui_1861 are separated by 331 nucleotides Dsui_1861 and Dsui_1862 are separated by 15 nucleotides
Dsui_1858: Dsui_1858 - transcriptional regulator, at 1,952,256 to 1,953,140
_1858
Dsui_1859: Dsui_1859 - hypothetical protein, at 1,953,159 to 1,953,512
_1859
Dsui_1860: Dsui_1860 - methyl-accepting chemotaxis protein, at 1,953,526 to 1,955,175
_1860
Dsui_1861: Dsui_1861 - HPt domain-containing protein, at 1,955,507 to 1,955,905
_1861
Dsui_1862: Dsui_1862 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,955,921 to 1,956,574
_1862
Position (kb)
1953
1954
1955
1956 Strain fitness (log2 ratio)
-2
-1
0
1 at 1952.729 kb on + strand, within Dsui_1858 at 1952.737 kb on - strand at 1952.784 kb on + strand, within Dsui_1858 at 1952.792 kb on - strand, within Dsui_1858 at 1952.825 kb on + strand, within Dsui_1858 at 1952.938 kb on + strand, within Dsui_1858 at 1952.938 kb on + strand, within Dsui_1858 at 1953.048 kb on - strand, within Dsui_1858 at 1953.344 kb on + strand, within Dsui_1859 at 1953.344 kb on + strand, within Dsui_1859 at 1953.344 kb on + strand at 1953.344 kb on + strand, within Dsui_1859 at 1953.344 kb on + strand, within Dsui_1859 at 1953.344 kb on + strand, within Dsui_1859 at 1953.352 kb on - strand, within Dsui_1859 at 1953.352 kb on - strand at 1953.352 kb on - strand at 1953.352 kb on - strand at 1953.357 kb on - strand at 1953.381 kb on - strand, within Dsui_1859 at 1953.436 kb on + strand, within Dsui_1859 at 1953.452 kb on - strand, within Dsui_1859 at 1953.507 kb on + strand at 1953.530 kb on + strand at 1953.538 kb on + strand at 1953.573 kb on + strand at 1953.573 kb on + strand at 1953.737 kb on - strand, within Dsui_1860 at 1953.737 kb on - strand, within Dsui_1860 at 1953.815 kb on + strand, within Dsui_1860 at 1953.849 kb on + strand at 1953.849 kb on + strand, within Dsui_1860 at 1953.849 kb on + strand, within Dsui_1860 at 1954.198 kb on + strand at 1954.386 kb on + strand at 1954.415 kb on - strand at 1954.427 kb on + strand, within Dsui_1860 at 1954.684 kb on + strand at 1954.859 kb on + strand at 1954.869 kb on + strand, within Dsui_1860 at 1955.022 kb on - strand at 1955.067 kb on + strand at 1955.075 kb on - strand at 1955.136 kb on + strand at 1955.167 kb on + strand at 1955.207 kb on - strand at 1955.288 kb on + strand at 1955.384 kb on - strand at 1955.580 kb on - strand, within Dsui_1861 at 1955.636 kb on - strand, within Dsui_1861 at 1955.659 kb on - strand, within Dsui_1861 at 1955.899 kb on + strand at 1955.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,952,729 + Dsui_1858 0.53 -0.2 1,952,737 - -0.1 1,952,784 + Dsui_1858 0.60 +0.3 1,952,792 - Dsui_1858 0.61 -0.1 1,952,825 + Dsui_1858 0.64 +0.2 1,952,938 + Dsui_1858 0.77 -0.3 1,952,938 + Dsui_1858 0.77 -0.2 1,953,048 - Dsui_1858 0.89 -0.1 1,953,344 + Dsui_1859 0.52 -1.1 1,953,344 + Dsui_1859 0.52 -0.1 1,953,344 + -0.1 1,953,344 + Dsui_1859 0.52 +0.9 1,953,344 + Dsui_1859 0.52 -1.5 1,953,344 + Dsui_1859 0.52 +0.9 1,953,352 - Dsui_1859 0.55 -2.7 1,953,352 - +0.9 1,953,352 - -1.1 1,953,352 - +0.9 1,953,357 - +0.9 1,953,381 - Dsui_1859 0.63 -0.1 1,953,436 + Dsui_1859 0.78 -0.1 1,953,452 - Dsui_1859 0.83 -0.1 1,953,507 + +0.9 1,953,530 + +0.9 1,953,538 + -1.5 1,953,573 + +0.9 1,953,573 + -1.7 1,953,737 - Dsui_1860 0.13 -0.7 1,953,737 - Dsui_1860 0.13 +0.9 1,953,815 + Dsui_1860 0.18 +0.9 1,953,849 + +0.9 1,953,849 + Dsui_1860 0.20 +0.9 1,953,849 + Dsui_1860 0.20 +0.9 1,954,198 + +0.9 1,954,386 + +0.9 1,954,415 - +0.9 1,954,427 + Dsui_1860 0.55 -1.7 1,954,684 + -0.1 1,954,859 + +0.9 1,954,869 + Dsui_1860 0.81 -0.7 1,955,022 - +0.9 1,955,067 + -0.7 1,955,075 - -0.7 1,955,136 + +0.9 1,955,167 + -0.1 1,955,207 - +0.9 1,955,288 + -0.7 1,955,384 - -0.1 1,955,580 - Dsui_1861 0.18 -1.1 1,955,636 - Dsui_1861 0.32 +0.9 1,955,659 - Dsui_1861 0.38 -0.1 1,955,899 + -1.1 1,955,985 - -0.0
Or see this region's nucleotide sequence