Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1741 and Dsui_1742 are separated by 30 nucleotides Dsui_1742 and Dsui_1743 overlap by 1 nucleotides Dsui_1743 and Dsui_1744 are separated by 13 nucleotides Dsui_1744 and Dsui_1745 overlap by 4 nucleotides
Dsui_1741: Dsui_1741 - flagellar hook-associated protein FlgK, at 1,829,404 to 1,831,581
_1741
Dsui_1742: Dsui_1742 - flagellar hook-associated protein 3, at 1,831,612 to 1,832,580
_1742
Dsui_1743: Dsui_1743 - hypothetical protein, at 1,832,580 to 1,833,044
_1743
Dsui_1744: Dsui_1744 - flagellar biosynthetic protein FliR, at 1,833,058 to 1,833,843
_1744
Dsui_1745: Dsui_1745 - flagellar biosynthetic protein FliQ, at 1,833,840 to 1,834,109
_1745
Position (kb)
1832
1833
1834 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1831.606 kb on + strand at 1831.606 kb on + strand at 1831.614 kb on - strand at 1831.632 kb on + strand at 1831.640 kb on - strand at 1831.675 kb on + strand at 1831.680 kb on + strand at 1831.688 kb on + strand at 1831.688 kb on - strand at 1831.696 kb on - strand at 1831.724 kb on + strand, within Dsui_1742 at 1831.811 kb on - strand, within Dsui_1742 at 1831.823 kb on - strand, within Dsui_1742 at 1831.823 kb on - strand, within Dsui_1742 at 1831.837 kb on + strand, within Dsui_1742 at 1831.867 kb on - strand, within Dsui_1742 at 1831.892 kb on - strand, within Dsui_1742 at 1831.971 kb on + strand, within Dsui_1742 at 1832.006 kb on + strand, within Dsui_1742 at 1832.006 kb on + strand, within Dsui_1742 at 1832.034 kb on - strand, within Dsui_1742 at 1832.067 kb on - strand, within Dsui_1742 at 1832.071 kb on + strand, within Dsui_1742 at 1832.123 kb on - strand, within Dsui_1742 at 1832.123 kb on - strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.218 kb on + strand, within Dsui_1742 at 1832.307 kb on - strand, within Dsui_1742 at 1832.311 kb on + strand, within Dsui_1742 at 1832.319 kb on - strand, within Dsui_1742 at 1832.344 kb on + strand, within Dsui_1742 at 1832.437 kb on + strand, within Dsui_1742 at 1832.472 kb on + strand, within Dsui_1742 at 1832.488 kb on - strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.525 kb on - strand at 1832.525 kb on - strand at 1832.525 kb on - strand at 1832.549 kb on + strand at 1832.555 kb on + strand at 1832.555 kb on + strand at 1832.563 kb on - strand at 1832.563 kb on - strand at 1832.599 kb on - strand at 1832.602 kb on - strand at 1832.664 kb on - strand, within Dsui_1743 at 1832.675 kb on - strand, within Dsui_1743 at 1832.679 kb on + strand, within Dsui_1743 at 1832.682 kb on - strand, within Dsui_1743 at 1832.687 kb on - strand, within Dsui_1743 at 1832.813 kb on + strand, within Dsui_1743 at 1832.821 kb on - strand, within Dsui_1743 at 1832.875 kb on - strand, within Dsui_1743 at 1832.916 kb on - strand, within Dsui_1743 at 1833.007 kb on + strand at 1833.062 kb on + strand at 1833.083 kb on - strand at 1833.088 kb on - strand at 1833.134 kb on + strand at 1833.134 kb on + strand at 1833.134 kb on + strand at 1833.139 kb on + strand, within Dsui_1744 at 1833.142 kb on - strand, within Dsui_1744 at 1833.158 kb on - strand, within Dsui_1744 at 1833.165 kb on + strand, within Dsui_1744 at 1833.165 kb on + strand, within Dsui_1744 at 1833.173 kb on - strand, within Dsui_1744 at 1833.240 kb on + strand, within Dsui_1744 at 1833.285 kb on + strand, within Dsui_1744 at 1833.296 kb on + strand, within Dsui_1744 at 1833.306 kb on + strand, within Dsui_1744 at 1833.325 kb on - strand, within Dsui_1744 at 1833.339 kb on + strand at 1833.347 kb on - strand, within Dsui_1744 at 1833.383 kb on + strand, within Dsui_1744 at 1833.391 kb on - strand, within Dsui_1744 at 1833.444 kb on + strand, within Dsui_1744 at 1833.452 kb on - strand, within Dsui_1744 at 1833.583 kb on - strand, within Dsui_1744 at 1833.639 kb on - strand, within Dsui_1744 at 1833.646 kb on - strand, within Dsui_1744 at 1833.663 kb on + strand, within Dsui_1744 at 1833.827 kb on + strand at 1833.828 kb on + strand at 1833.897 kb on - strand, within Dsui_1745 at 1833.965 kb on + strand, within Dsui_1745 at 1834.037 kb on + strand, within Dsui_1745
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,831,606 + -0.4 1,831,606 + -2.2 1,831,614 - +0.6 1,831,632 + +0.6 1,831,640 - -2.4 1,831,675 + +0.6 1,831,680 + -2.5 1,831,688 + +2.0 1,831,688 - +0.6 1,831,696 - -0.4 1,831,724 + Dsui_1742 0.12 -0.4 1,831,811 - Dsui_1742 0.21 -1.7 1,831,823 - Dsui_1742 0.22 -1.4 1,831,823 - Dsui_1742 0.22 +0.6 1,831,837 + Dsui_1742 0.23 -2.0 1,831,867 - Dsui_1742 0.26 -1.0 1,831,892 - Dsui_1742 0.29 -2.0 1,831,971 + Dsui_1742 0.37 +0.6 1,832,006 + Dsui_1742 0.41 +0.6 1,832,006 + Dsui_1742 0.41 -1.7 1,832,034 - Dsui_1742 0.44 +0.6 1,832,067 - Dsui_1742 0.47 -1.0 1,832,071 + Dsui_1742 0.47 +0.6 1,832,123 - Dsui_1742 0.53 -1.0 1,832,123 - Dsui_1742 0.53 -1.0 1,832,213 + Dsui_1742 0.62 +0.6 1,832,213 + Dsui_1742 0.62 -0.4 1,832,213 + Dsui_1742 0.62 +0.6 1,832,213 + Dsui_1742 0.62 -0.4 1,832,213 + Dsui_1742 0.62 -1.0 1,832,213 + Dsui_1742 0.62 +0.6 1,832,218 + Dsui_1742 0.63 -1.0 1,832,307 - Dsui_1742 0.72 +0.6 1,832,311 + Dsui_1742 0.72 -1.1 1,832,319 - Dsui_1742 0.73 -2.2 1,832,344 + Dsui_1742 0.76 +0.6 1,832,437 + Dsui_1742 0.85 -1.4 1,832,472 + Dsui_1742 0.89 -1.7 1,832,488 - +1.6 1,832,517 + -2.4 1,832,517 + -2.0 1,832,517 + -1.0 1,832,517 + -1.0 1,832,525 - +0.6 1,832,525 - -0.4 1,832,525 - -2.8 1,832,549 + -0.3 1,832,555 + -2.4 1,832,555 + -0.8 1,832,563 - -1.4 1,832,563 - -1.7 1,832,599 - -0.4 1,832,602 - +0.6 1,832,664 - Dsui_1743 0.18 -1.0 1,832,675 - Dsui_1743 0.20 +0.6 1,832,679 + Dsui_1743 0.21 -1.4 1,832,682 - Dsui_1743 0.22 -1.0 1,832,687 - Dsui_1743 0.23 -0.4 1,832,813 + Dsui_1743 0.50 +0.6 1,832,821 - Dsui_1743 0.52 +0.6 1,832,875 - Dsui_1743 0.63 -1.5 1,832,916 - Dsui_1743 0.72 -1.7 1,833,007 + -2.2 1,833,062 + +0.6 1,833,083 - -0.0 1,833,088 - +0.3 1,833,134 + -0.4 1,833,134 + +0.6 1,833,134 + +0.6 1,833,139 + Dsui_1744 0.10 +0.6 1,833,142 - Dsui_1744 0.11 +0.6 1,833,158 - Dsui_1744 0.13 -0.5 1,833,165 + Dsui_1744 0.14 +0.6 1,833,165 + Dsui_1744 0.14 +0.6 1,833,173 - Dsui_1744 0.15 -0.3 1,833,240 + Dsui_1744 0.23 -1.4 1,833,285 + Dsui_1744 0.29 -1.0 1,833,296 + Dsui_1744 0.30 -1.0 1,833,306 + Dsui_1744 0.32 -2.2 1,833,325 - Dsui_1744 0.34 -0.2 1,833,339 + +0.6 1,833,347 - Dsui_1744 0.37 -0.1 1,833,383 + Dsui_1744 0.41 +1.2 1,833,391 - Dsui_1744 0.42 -0.4 1,833,444 + Dsui_1744 0.49 -1.0 1,833,452 - Dsui_1744 0.50 -0.5 1,833,583 - Dsui_1744 0.67 -0.1 1,833,639 - Dsui_1744 0.74 -0.3 1,833,646 - Dsui_1744 0.75 -1.2 1,833,663 + Dsui_1744 0.77 -1.4 1,833,827 + -2.2 1,833,828 + +0.6 1,833,897 - Dsui_1745 0.21 -0.4 1,833,965 + Dsui_1745 0.46 +0.6 1,834,037 + Dsui_1745 0.73 -1.0
Or see this region's nucleotide sequence