Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1657 and Dsui_1658 are separated by 3 nucleotides Dsui_1658 and Dsui_1659 are separated by 350 nucleotides Dsui_1659 and Dsui_1660 are separated by 160 nucleotides
Dsui_1657: Dsui_1657 - carbohydrate-selective porin, at 1,739,300 to 1,740,850
_1657
Dsui_1658: Dsui_1658 - uncharacterized protein probably involved in high-affinity Fe2+ transport, at 1,740,854 to 1,741,405
_1658
Dsui_1659: Dsui_1659 - Uncharacterized protein conserved in bacteria (DUF2325), at 1,741,756 to 1,743,075
_1659
Dsui_1660: Dsui_1660 - outer membrane cobalamin receptor protein, at 1,743,236 to 1,745,314
_1660
Position (kb)
1741
1742
1743
1744 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1740.840 kb on - strand at 1740.854 kb on - strand at 1740.913 kb on + strand, within Dsui_1658 at 1740.920 kb on - strand, within Dsui_1658 at 1741.014 kb on - strand, within Dsui_1658 at 1741.118 kb on - strand, within Dsui_1658 at 1741.132 kb on + strand, within Dsui_1658 at 1741.196 kb on - strand, within Dsui_1658 at 1741.309 kb on - strand, within Dsui_1658 at 1741.354 kb on - strand at 1741.402 kb on - strand at 1741.575 kb on + strand at 1741.575 kb on + strand at 1741.580 kb on + strand at 1741.700 kb on - strand at 1741.702 kb on + strand at 1741.747 kb on - strand at 1741.978 kb on - strand at 1742.015 kb on + strand at 1742.020 kb on - strand, within Dsui_1659 at 1742.064 kb on - strand, within Dsui_1659 at 1742.155 kb on - strand at 1742.176 kb on - strand at 1742.179 kb on + strand, within Dsui_1659 at 1742.220 kb on + strand, within Dsui_1659 at 1742.269 kb on - strand, within Dsui_1659 at 1742.283 kb on - strand at 1742.295 kb on + strand, within Dsui_1659 at 1742.324 kb on - strand at 1742.337 kb on - strand at 1742.343 kb on + strand, within Dsui_1659 at 1742.926 kb on + strand, within Dsui_1659 at 1742.970 kb on + strand at 1743.002 kb on - strand at 1743.376 kb on + strand at 1743.381 kb on + strand at 1743.393 kb on + strand at 1743.408 kb on - strand at 1743.555 kb on - strand at 1743.642 kb on + strand at 1743.678 kb on - strand at 1743.703 kb on + strand, within Dsui_1660 at 1743.757 kb on + strand, within Dsui_1660 at 1743.820 kb on + strand, within Dsui_1660
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,740,840 - -0.2 1,740,854 - -0.3 1,740,913 + Dsui_1658 0.11 -1.5 1,740,920 - Dsui_1658 0.12 +0.2 1,741,014 - Dsui_1658 0.29 -0.3 1,741,118 - Dsui_1658 0.48 -0.5 1,741,132 + Dsui_1658 0.50 -1.5 1,741,196 - Dsui_1658 0.62 +0.0 1,741,309 - Dsui_1658 0.82 -0.2 1,741,354 - +0.4 1,741,402 - -0.2 1,741,575 + +0.5 1,741,575 + +0.5 1,741,580 + +0.5 1,741,700 - +0.5 1,741,702 + -2.0 1,741,747 - +0.5 1,741,978 - +0.5 1,742,015 + -0.5 1,742,020 - Dsui_1659 0.20 +0.5 1,742,064 - Dsui_1659 0.23 -2.5 1,742,155 - -0.5 1,742,176 - -1.0 1,742,179 + Dsui_1659 0.32 -0.5 1,742,220 + Dsui_1659 0.35 -2.5 1,742,269 - Dsui_1659 0.39 -1.8 1,742,283 - -1.0 1,742,295 + Dsui_1659 0.41 -1.0 1,742,324 - -1.0 1,742,337 - +0.5 1,742,343 + Dsui_1659 0.44 -1.0 1,742,926 + Dsui_1659 0.89 +0.5 1,742,970 + -1.0 1,743,002 - +0.5 1,743,376 + +0.2 1,743,381 + -2.6 1,743,393 + -1.8 1,743,408 - -3.2 1,743,555 - -0.5 1,743,642 + +0.5 1,743,678 - +0.5 1,743,703 + Dsui_1660 0.22 -2.0 1,743,757 + Dsui_1660 0.25 -1.5 1,743,820 + Dsui_1660 0.28 -0.5
Or see this region's nucleotide sequence