Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1592 and Dsui_1593 are separated by 333 nucleotides Dsui_1593 and Dsui_1594 are separated by 84 nucleotides Dsui_1594 and Dsui_1595 are separated by 65 nucleotides
Dsui_1592: Dsui_1592 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,672,278 to 1,673,432
_1592
Dsui_1593: Dsui_1593 - putative TIM-barrel protein, nifR3 family, at 1,673,766 to 1,674,797
_1593
Dsui_1594: Dsui_1594 - Factor for inversion stimulation Fis, transcriptional activator, at 1,674,882 to 1,675,121
_1594
Dsui_1595: Dsui_1595 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,675,187 to 1,676,752
_1595
Position (kb)
1673
1674
1675 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1673.571 kb on + strand at 1673.605 kb on + strand at 1673.896 kb on + strand, within Dsui_1593 at 1674.012 kb on + strand, within Dsui_1593 at 1674.293 kb on + strand, within Dsui_1593 at 1674.296 kb on + strand, within Dsui_1593 at 1674.314 kb on + strand, within Dsui_1593 at 1674.330 kb on - strand at 1674.394 kb on - strand at 1674.411 kb on - strand at 1674.447 kb on + strand, within Dsui_1593 at 1674.622 kb on - strand, within Dsui_1593 at 1674.724 kb on + strand at 1674.736 kb on - strand at 1674.752 kb on - strand at 1674.812 kb on + strand at 1674.834 kb on + strand at 1675.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,673,571 + -0.5 1,673,605 + +0.5 1,673,896 + Dsui_1593 0.13 -2.9 1,674,012 + Dsui_1593 0.24 -1.3 1,674,293 + Dsui_1593 0.51 -0.3 1,674,296 + Dsui_1593 0.51 -0.6 1,674,314 + Dsui_1593 0.53 +0.0 1,674,330 - +0.5 1,674,394 - +0.5 1,674,411 - +0.5 1,674,447 + Dsui_1593 0.66 +0.2 1,674,622 - Dsui_1593 0.83 +0.5 1,674,724 + -0.2 1,674,736 - -1.5 1,674,752 - -2.0 1,674,812 + +0.1 1,674,834 + -0.5 1,675,106 - -0.5
Or see this region's nucleotide sequence