Strain Fitness in Dechlorosoma suillum PS around Dsui_1569

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1567 and Dsui_1568 are separated by 121 nucleotidesDsui_1568 and Dsui_1569 are separated by 3 nucleotidesDsui_1569 and Dsui_1570 are separated by 57 nucleotides Dsui_1567: Dsui_1567 - Peroxiredoxin, at 1,640,086 to 1,640,646 _1567 Dsui_1568: Dsui_1568 - RNA methyltransferase, RsmE family, at 1,640,768 to 1,641,517 _1568 Dsui_1569: Dsui_1569 - polyphosphate:AMP phosphotransferase, at 1,641,521 to 1,643,029 _1569 Dsui_1570: Dsui_1570 - amino-acid N-acetyltransferase, at 1,643,087 to 1,644,433 _1570 Position (kb) 1641 1642 1643 1644Strain fitness (log2 ratio) -2 -1 0 1at 1640.676 kb on - strandat 1640.676 kb on - strandat 1640.676 kb on - strandat 1640.826 kb on + strandat 1640.826 kb on + strandat 1640.834 kb on - strandat 1640.834 kb on - strandat 1640.943 kb on - strandat 1640.956 kb on - strand, within Dsui_1568at 1641.030 kb on - strand, within Dsui_1568at 1641.240 kb on - strand, within Dsui_1568at 1641.613 kb on + strandat 1641.628 kb on + strandat 1641.676 kb on + strand, within Dsui_1569at 1641.828 kb on - strandat 1641.849 kb on - strand, within Dsui_1569at 1641.849 kb on - strandat 1641.849 kb on - strand, within Dsui_1569at 1641.849 kb on - strandat 1641.855 kb on - strandat 1641.879 kb on + strand, within Dsui_1569at 1641.959 kb on - strandat 1642.035 kb on - strand, within Dsui_1569at 1642.038 kb on + strand, within Dsui_1569at 1642.052 kb on + strand, within Dsui_1569at 1642.138 kb on + strand, within Dsui_1569at 1642.246 kb on + strand, within Dsui_1569at 1642.289 kb on + strand, within Dsui_1569at 1642.291 kb on - strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.381 kb on + strand, within Dsui_1569at 1642.383 kb on + strand, within Dsui_1569at 1642.484 kb on - strand, within Dsui_1569at 1642.719 kb on + strand, within Dsui_1569at 1642.781 kb on - strand, within Dsui_1569at 1643.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,640,676 - -0.9
1,640,676 - +0.1
1,640,676 - -1.4
1,640,826 + +0.2
1,640,826 + +1.7
1,640,834 - -0.4
1,640,834 - -0.4
1,640,943 - +0.6
1,640,956 - Dsui_1568 0.25 +0.6
1,641,030 - Dsui_1568 0.35 +0.6
1,641,240 - Dsui_1568 0.63 -1.8
1,641,613 + -1.4
1,641,628 + -0.8
1,641,676 + Dsui_1569 0.10 +0.1
1,641,828 - +0.6
1,641,849 - Dsui_1569 0.22 -2.0
1,641,849 - +0.6
1,641,849 - Dsui_1569 0.22 -0.4
1,641,849 - +0.6
1,641,855 - -0.4
1,641,879 + Dsui_1569 0.24 -1.0
1,641,959 - +0.6
1,642,035 - Dsui_1569 0.34 -0.4
1,642,038 + Dsui_1569 0.34 -1.0
1,642,052 + Dsui_1569 0.35 +1.6
1,642,138 + Dsui_1569 0.41 +0.3
1,642,246 + Dsui_1569 0.48 -0.2
1,642,289 + Dsui_1569 0.51 -0.9
1,642,291 - Dsui_1569 0.51 -2.6
1,642,312 + Dsui_1569 0.52 -1.6
1,642,312 + Dsui_1569 0.52 -2.4
1,642,312 + Dsui_1569 0.52 +0.3
1,642,381 + Dsui_1569 0.57 +0.1
1,642,383 + Dsui_1569 0.57 -0.4
1,642,484 - Dsui_1569 0.64 +0.6
1,642,719 + Dsui_1569 0.79 -2.4
1,642,781 - Dsui_1569 0.83 -1.0
1,643,034 + +0.6

Or see this region's nucleotide sequence