Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1512 and Dsui_1513 are separated by 163 nucleotides Dsui_1513 and Dsui_1514 overlap by 4 nucleotides Dsui_1514 and Dsui_1515 are separated by 15 nucleotides Dsui_1515 and Dsui_1516 are separated by 70 nucleotides Dsui_1516 and Dsui_1517 are separated by 19 nucleotides
Dsui_1512: Dsui_1512 - Na+/H+ antiporter NhaD-like permease, at 1,576,011 to 1,577,246
_1512
Dsui_1513: Dsui_1513 - hypothetical protein, at 1,577,410 to 1,577,547
_1513
Dsui_1514: Dsui_1514 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 1,577,544 to 1,578,017
_1514
Dsui_1515: Dsui_1515 - poly(A) polymerase, at 1,578,033 to 1,579,418
_1515
Dsui_1516: Dsui_1516 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 1,579,489 to 1,580,151
_1516
Dsui_1517: Dsui_1517 - DnaA regulatory inactivator Hda, at 1,580,171 to 1,580,854
_1517
Position (kb)
1578
1579
1580 Strain fitness (log2 ratio)
-2
-1
0
1 at 1577.034 kb on - strand, within Dsui_1512 at 1577.034 kb on - strand, within Dsui_1512 at 1577.056 kb on - strand, within Dsui_1512 at 1577.064 kb on - strand, within Dsui_1512 at 1577.074 kb on - strand, within Dsui_1512 at 1577.074 kb on - strand, within Dsui_1512 at 1577.074 kb on - strand, within Dsui_1512 at 1577.091 kb on + strand at 1577.135 kb on + strand at 1577.140 kb on + strand at 1577.150 kb on + strand at 1577.150 kb on + strand at 1577.150 kb on + strand at 1577.158 kb on - strand at 1577.158 kb on - strand at 1577.158 kb on - strand at 1577.158 kb on - strand at 1577.158 kb on - strand at 1577.158 kb on - strand at 1577.263 kb on + strand at 1577.263 kb on + strand at 1577.263 kb on + strand at 1577.270 kb on + strand at 1577.270 kb on + strand at 1577.271 kb on - strand at 1577.271 kb on - strand at 1577.278 kb on - strand at 1577.305 kb on - strand at 1577.305 kb on - strand at 1577.324 kb on + strand at 1577.340 kb on - strand at 1577.342 kb on + strand at 1577.406 kb on - strand at 1577.433 kb on + strand at 1577.455 kb on - strand, within Dsui_1513 at 1577.459 kb on + strand, within Dsui_1513 at 1577.465 kb on - strand, within Dsui_1513 at 1577.474 kb on - strand, within Dsui_1513 at 1577.492 kb on - strand, within Dsui_1513 at 1577.502 kb on + strand, within Dsui_1513 at 1577.534 kb on + strand at 1578.136 kb on + strand at 1578.268 kb on + strand, within Dsui_1515 at 1578.997 kb on - strand, within Dsui_1515 at 1579.071 kb on - strand, within Dsui_1515 at 1579.155 kb on - strand, within Dsui_1515 at 1579.170 kb on - strand, within Dsui_1515 at 1580.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,577,034 - Dsui_1512 0.83 +1.1 1,577,034 - Dsui_1512 0.83 -0.9 1,577,056 - Dsui_1512 0.85 -0.9 1,577,064 - Dsui_1512 0.85 +0.2 1,577,074 - Dsui_1512 0.86 +1.1 1,577,074 - Dsui_1512 0.86 +0.0 1,577,074 - Dsui_1512 0.86 -0.1 1,577,091 + +0.6 1,577,135 + -1.8 1,577,140 + +0.6 1,577,150 + -1.0 1,577,150 + +0.6 1,577,150 + -1.4 1,577,158 - +0.6 1,577,158 - -0.3 1,577,158 - +0.6 1,577,158 - -0.3 1,577,158 - -0.1 1,577,158 - -0.7 1,577,263 + -0.4 1,577,263 + -1.0 1,577,263 + +0.6 1,577,270 + +0.6 1,577,270 + +0.6 1,577,271 - +0.1 1,577,271 - -0.1 1,577,278 - -0.6 1,577,305 - +1.1 1,577,305 - -0.6 1,577,324 + -1.0 1,577,340 - +0.1 1,577,342 + -1.4 1,577,406 - -0.3 1,577,433 + +0.6 1,577,455 - Dsui_1513 0.33 +0.8 1,577,459 + Dsui_1513 0.36 +0.6 1,577,465 - Dsui_1513 0.40 +0.2 1,577,474 - Dsui_1513 0.46 +0.0 1,577,492 - Dsui_1513 0.59 -0.0 1,577,502 + Dsui_1513 0.67 +0.6 1,577,534 + +0.6 1,578,136 + +0.6 1,578,268 + Dsui_1515 0.17 -1.4 1,578,997 - Dsui_1515 0.70 +1.3 1,579,071 - Dsui_1515 0.75 +0.5 1,579,155 - Dsui_1515 0.81 +0.7 1,579,170 - Dsui_1515 0.82 +1.0 1,580,176 - -0.4
Or see this region's nucleotide sequence