Strain Fitness in Dechlorosoma suillum PS around Dsui_1437

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1436 and Dsui_1437 are separated by 18 nucleotidesDsui_1437 and Dsui_1438 are separated by 9 nucleotidesDsui_1438 and Dsui_1439 are separated by 9 nucleotides Dsui_1436: Dsui_1436 - methyl-accepting chemotaxis protein, at 1,489,217 to 1,490,839 _1436 Dsui_1437: Dsui_1437 - chemotaxis protein histidine kinase-like protein, at 1,490,858 to 1,493,092 _1437 Dsui_1438: Dsui_1438 - putative NTP binding protein (contains STAS domain), at 1,493,102 to 1,493,410 _1438 Dsui_1439: Dsui_1439 - methyl-accepting chemotaxis protein, at 1,493,420 to 1,494,691 _1439 Position (kb) 1490 1491 1492 1493 1494Strain fitness (log2 ratio) -2 -1 0 1at 1489.917 kb on + strand, within Dsui_1436at 1489.924 kb on + strand, within Dsui_1436at 1489.924 kb on + strand, within Dsui_1436at 1489.953 kb on + strand, within Dsui_1436at 1490.027 kb on - strand, within Dsui_1436at 1490.067 kb on + strand, within Dsui_1436at 1490.193 kb on - strand, within Dsui_1436at 1490.366 kb on - strand, within Dsui_1436at 1490.513 kb on - strand, within Dsui_1436at 1490.520 kb on + strand, within Dsui_1436at 1490.686 kb on - strandat 1490.687 kb on - strandat 1490.687 kb on - strandat 1490.922 kb on - strandat 1490.973 kb on + strandat 1491.012 kb on + strandat 1491.053 kb on - strandat 1491.306 kb on - strand, within Dsui_1437at 1491.397 kb on + strand, within Dsui_1437at 1491.402 kb on - strand, within Dsui_1437at 1491.446 kb on + strand, within Dsui_1437at 1491.454 kb on + strand, within Dsui_1437at 1491.533 kb on - strand, within Dsui_1437at 1491.536 kb on + strand, within Dsui_1437at 1491.557 kb on - strand, within Dsui_1437at 1491.561 kb on + strand, within Dsui_1437at 1491.708 kb on - strand, within Dsui_1437at 1491.848 kb on + strand, within Dsui_1437at 1491.974 kb on - strand, within Dsui_1437at 1491.986 kb on - strand, within Dsui_1437at 1492.168 kb on - strand, within Dsui_1437at 1492.247 kb on - strand, within Dsui_1437at 1492.259 kb on - strand, within Dsui_1437at 1492.349 kb on + strand, within Dsui_1437at 1492.349 kb on + strand, within Dsui_1437at 1492.405 kb on + strand, within Dsui_1437at 1492.405 kb on + strand, within Dsui_1437at 1492.494 kb on + strand, within Dsui_1437at 1492.583 kb on + strand, within Dsui_1437at 1492.591 kb on - strand, within Dsui_1437at 1492.672 kb on + strandat 1492.826 kb on + strand, within Dsui_1437at 1492.834 kb on - strand, within Dsui_1437at 1492.834 kb on - strand, within Dsui_1437at 1493.291 kb on - strand, within Dsui_1438at 1493.325 kb on - strand, within Dsui_1438at 1493.356 kb on - strand, within Dsui_1438at 1493.379 kb on - strand, within Dsui_1438at 1493.405 kb on + strandat 1493.418 kb on + strandat 1493.426 kb on - strandat 1493.490 kb on - strandat 1493.531 kb on + strandat 1493.552 kb on - strand, within Dsui_1439at 1493.589 kb on + strand, within Dsui_1439at 1493.599 kb on + strand, within Dsui_1439at 1493.667 kb on + strand, within Dsui_1439at 1493.692 kb on - strand, within Dsui_1439at 1493.734 kb on - strand, within Dsui_1439at 1493.782 kb on + strand, within Dsui_1439at 1493.790 kb on + strand, within Dsui_1439at 1493.790 kb on - strand, within Dsui_1439at 1493.838 kb on + strand, within Dsui_1439at 1494.073 kb on + strand, within Dsui_1439

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,489,917 + Dsui_1436 0.43 -0.5
1,489,924 + Dsui_1436 0.44 +0.5
1,489,924 + Dsui_1436 0.44 -1.0
1,489,953 + Dsui_1436 0.45 +1.4
1,490,027 - Dsui_1436 0.50 -0.2
1,490,067 + Dsui_1436 0.52 -1.8
1,490,193 - Dsui_1436 0.60 -0.5
1,490,366 - Dsui_1436 0.71 -0.9
1,490,513 - Dsui_1436 0.80 +0.4
1,490,520 + Dsui_1436 0.80 +0.5
1,490,686 - +0.1
1,490,687 - -0.6
1,490,687 - +0.4
1,490,922 - -0.4
1,490,973 + -1.5
1,491,012 + -0.7
1,491,053 - -0.2
1,491,306 - Dsui_1437 0.20 +0.5
1,491,397 + Dsui_1437 0.24 -1.5
1,491,402 - Dsui_1437 0.24 +0.2
1,491,446 + Dsui_1437 0.26 -1.0
1,491,454 + Dsui_1437 0.27 -1.8
1,491,533 - Dsui_1437 0.30 -0.2
1,491,536 + Dsui_1437 0.30 -1.8
1,491,557 - Dsui_1437 0.31 -0.2
1,491,561 + Dsui_1437 0.31 -1.8
1,491,708 - Dsui_1437 0.38 -0.4
1,491,848 + Dsui_1437 0.44 -1.0
1,491,974 - Dsui_1437 0.50 -0.4
1,491,986 - Dsui_1437 0.50 -0.6
1,492,168 - Dsui_1437 0.59 +0.5
1,492,247 - Dsui_1437 0.62 -0.5
1,492,259 - Dsui_1437 0.63 -0.4
1,492,349 + Dsui_1437 0.67 -1.0
1,492,349 + Dsui_1437 0.67 -1.0
1,492,405 + Dsui_1437 0.69 -1.0
1,492,405 + Dsui_1437 0.69 -2.0
1,492,494 + Dsui_1437 0.73 -0.5
1,492,583 + Dsui_1437 0.77 -0.5
1,492,591 - Dsui_1437 0.78 -0.3
1,492,672 + -0.5
1,492,826 + Dsui_1437 0.88 -1.0
1,492,834 - Dsui_1437 0.88 +0.4
1,492,834 - Dsui_1437 0.88 -0.3
1,493,291 - Dsui_1438 0.61 -0.4
1,493,325 - Dsui_1438 0.72 +0.4
1,493,356 - Dsui_1438 0.82 +0.5
1,493,379 - Dsui_1438 0.90 -0.7
1,493,405 + -1.5
1,493,418 + -0.5
1,493,426 - -0.7
1,493,490 - +0.5
1,493,531 + -2.3
1,493,552 - Dsui_1439 0.10 +0.3
1,493,589 + Dsui_1439 0.13 +0.5
1,493,599 + Dsui_1439 0.14 -0.8
1,493,667 + Dsui_1439 0.19 -0.5
1,493,692 - Dsui_1439 0.21 -0.2
1,493,734 - Dsui_1439 0.25 -0.2
1,493,782 + Dsui_1439 0.28 -0.5
1,493,790 + Dsui_1439 0.29 -0.5
1,493,790 - Dsui_1439 0.29 -0.5
1,493,838 + Dsui_1439 0.33 -2.0
1,494,073 + Dsui_1439 0.51 +0.5

Or see this region's nucleotide sequence