Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1401 and Dsui_1402 are separated by 97 nucleotides Dsui_1402 and Dsui_1403 overlap by 1 nucleotides Dsui_1403 and Dsui_1404 are separated by 19 nucleotides Dsui_1404 and Dsui_1405 overlap by 4 nucleotides
Dsui_1401: Dsui_1401 - surface lipoprotein, at 1,461,079 to 1,461,798
_1401
Dsui_1402: Dsui_1402 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 1,461,896 to 1,462,525
_1402
Dsui_1403: Dsui_1403 - putative NTP binding protein (contains STAS domain), at 1,462,525 to 1,462,812
_1403
Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755
_1404
Dsui_1405: Dsui_1405 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 1,463,752 to 1,464,507
_1405
Position (kb)
1462
1463 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1461.637 kb on - strand at 1461.879 kb on + strand at 1462.045 kb on + strand, within Dsui_1402 at 1462.141 kb on + strand, within Dsui_1402 at 1462.336 kb on + strand, within Dsui_1402 at 1462.514 kb on + strand at 1462.562 kb on + strand, within Dsui_1403 at 1462.806 kb on + strand at 1462.807 kb on + strand at 1462.990 kb on + strand, within Dsui_1404 at 1463.451 kb on + strand, within Dsui_1404
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,461,637 - +0.5 1,461,879 + -4.2 1,462,045 + Dsui_1402 0.24 -5.4 1,462,141 + Dsui_1402 0.39 -3.7 1,462,336 + Dsui_1402 0.70 -5.0 1,462,514 + -2.4 1,462,562 + Dsui_1403 0.13 -4.8 1,462,806 + +0.6 1,462,807 + +0.7 1,462,990 + Dsui_1404 0.17 -0.5 1,463,451 + Dsui_1404 0.67 -1.3
Or see this region's nucleotide sequence