Strain Fitness in Dechlorosoma suillum PS around Dsui_1381

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1379 and Dsui_1380 are separated by 1 nucleotidesDsui_1380 and Dsui_1381 overlap by 4 nucleotidesDsui_1381 and Dsui_1382 overlap by 1 nucleotides Dsui_1379: Dsui_1379 - lipopolysaccharide transport periplasmic protein LptA, at 1,435,347 to 1,435,955 _1379 Dsui_1380: Dsui_1380 - hypothetical protein, at 1,435,957 to 1,436,547 _1380 Dsui_1381: Dsui_1381 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 1,436,544 to 1,437,056 _1381 Dsui_1382: Dsui_1382 - KpsF/GutQ family protein, at 1,437,056 to 1,438,045 _1382 Position (kb) 1436 1437 1438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1435.963 kb on - strandat 1436.676 kb on - strand, within Dsui_1381at 1436.829 kb on - strand, within Dsui_1381at 1436.957 kb on - strand, within Dsui_1381at 1437.062 kb on - strandat 1437.071 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,435,963 - -3.9
1,436,676 - Dsui_1381 0.26 +1.5
1,436,829 - Dsui_1381 0.56 +1.6
1,436,957 - Dsui_1381 0.81 +1.0
1,437,062 - -0.5
1,437,071 - -2.8

Or see this region's nucleotide sequence