Strain Fitness in Dechlorosoma suillum PS around Dsui_1365

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1364 and Dsui_1365 are separated by 15 nucleotidesDsui_1365 and Dsui_1366 are separated by 36 nucleotides Dsui_1364: Dsui_1364 - serine phosphatase RsbU, regulator of sigma subunit, at 1,417,465 to 1,419,462 _1364 Dsui_1365: Dsui_1365 - hypothetical protein, at 1,419,478 to 1,419,693 _1365 Dsui_1366: Dsui_1366 - glutaminyl-tRNA synthetase, at 1,419,730 to 1,421,511 _1366 Position (kb) 1419 1420Strain fitness (log2 ratio) -3 -2 -1 0 1at 1418.483 kb on + strand, within Dsui_1364at 1418.534 kb on + strand, within Dsui_1364at 1418.569 kb on - strand, within Dsui_1364at 1418.617 kb on - strand, within Dsui_1364at 1418.664 kb on + strand, within Dsui_1364at 1418.672 kb on - strand, within Dsui_1364at 1418.780 kb on - strand, within Dsui_1364at 1418.816 kb on - strand, within Dsui_1364at 1418.906 kb on + strand, within Dsui_1364at 1418.906 kb on + strandat 1418.978 kb on + strand, within Dsui_1364at 1419.049 kb on - strand, within Dsui_1364at 1419.127 kb on - strand, within Dsui_1364at 1419.159 kb on - strand, within Dsui_1364at 1419.179 kb on + strand, within Dsui_1364at 1419.289 kb on + strandat 1419.310 kb on + strandat 1419.340 kb on + strandat 1419.497 kb on - strandat 1419.605 kb on + strandat 1419.673 kb on + strandat 1419.676 kb on - strandat 1419.727 kb on + strandat 1419.751 kb on - strandat 1419.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,418,483 + Dsui_1364 0.51 -1.4
1,418,534 + Dsui_1364 0.54 +0.6
1,418,569 - Dsui_1364 0.55 -0.2
1,418,617 - Dsui_1364 0.58 +0.6
1,418,664 + Dsui_1364 0.60 +0.6
1,418,672 - Dsui_1364 0.60 -0.9
1,418,780 - Dsui_1364 0.66 -0.4
1,418,816 - Dsui_1364 0.68 +0.4
1,418,906 + Dsui_1364 0.72 -0.9
1,418,906 + -0.4
1,418,978 + Dsui_1364 0.76 -1.8
1,419,049 - Dsui_1364 0.79 -0.6
1,419,127 - Dsui_1364 0.83 -0.2
1,419,159 - Dsui_1364 0.85 +0.5
1,419,179 + Dsui_1364 0.86 -1.8
1,419,289 + +0.6
1,419,310 + -2.9
1,419,340 + +0.6
1,419,497 - -0.1
1,419,605 + +0.6
1,419,673 + +0.6
1,419,676 - -0.1
1,419,727 + -1.4
1,419,751 - +0.2
1,419,751 - +0.2

Or see this region's nucleotide sequence