Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1259 and Dsui_1260 are separated by 71 nucleotides Dsui_1260 and Dsui_1261 are separated by 82 nucleotides Dsui_1261 and Dsui_1262 are separated by 140 nucleotides
Dsui_1259: Dsui_1259 - Pirin-related protein, at 1,323,112 to 1,323,822
_1259
Dsui_1260: Dsui_1260 - multimeric flavodoxin WrbA, at 1,323,894 to 1,324,469
_1260
Dsui_1261: Dsui_1261 - response regulator containing a CheY-like receiver domain and a GGDEF domain, at 1,324,552 to 1,325,352
_1261
Dsui_1262: Dsui_1262 - TRAP transporter, DctM subunit, at 1,325,493 to 1,326,959
_1262
Position (kb)
1324
1325
1326 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1323.655 kb on - strand at 1323.816 kb on + strand at 1323.823 kb on + strand at 1323.833 kb on - strand at 1323.875 kb on - strand at 1323.887 kb on - strand at 1323.937 kb on + strand at 1324.201 kb on + strand, within Dsui_1260 at 1324.267 kb on + strand, within Dsui_1260 at 1324.275 kb on - strand at 1324.300 kb on - strand, within Dsui_1260 at 1324.311 kb on + strand, within Dsui_1260 at 1324.319 kb on - strand at 1324.349 kb on - strand, within Dsui_1260 at 1324.352 kb on + strand, within Dsui_1260 at 1324.435 kb on + strand at 1324.497 kb on - strand at 1324.509 kb on + strand at 1324.526 kb on - strand at 1324.548 kb on - strand at 1324.687 kb on + strand, within Dsui_1261 at 1324.696 kb on + strand, within Dsui_1261 at 1324.767 kb on + strand, within Dsui_1261 at 1324.767 kb on + strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.802 kb on - strand, within Dsui_1261 at 1324.926 kb on - strand at 1324.985 kb on + strand, within Dsui_1261 at 1324.993 kb on - strand, within Dsui_1261 at 1325.069 kb on + strand, within Dsui_1261 at 1325.098 kb on - strand, within Dsui_1261 at 1325.111 kb on + strand, within Dsui_1261 at 1325.134 kb on - strand at 1325.218 kb on + strand, within Dsui_1261 at 1325.316 kb on + strand at 1325.316 kb on + strand at 1325.359 kb on - strand at 1325.364 kb on - strand at 1325.473 kb on + strand at 1325.507 kb on + strand at 1325.529 kb on + strand at 1325.537 kb on - strand at 1325.550 kb on + strand at 1325.550 kb on + strand at 1325.769 kb on + strand, within Dsui_1262 at 1325.806 kb on + strand, within Dsui_1262 at 1325.848 kb on - strand, within Dsui_1262 at 1325.911 kb on - strand, within Dsui_1262 at 1326.071 kb on + strand at 1326.071 kb on - strand, within Dsui_1262 at 1326.152 kb on + strand, within Dsui_1262 at 1326.161 kb on - strand, within Dsui_1262 at 1326.206 kb on - strand, within Dsui_1262 at 1326.254 kb on + strand at 1326.262 kb on - strand, within Dsui_1262 at 1326.325 kb on - strand, within Dsui_1262
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,323,655 - -0.4 1,323,816 + -0.4 1,323,823 + +0.6 1,323,833 - +0.6 1,323,875 - -0.4 1,323,887 - +0.6 1,323,937 + +0.6 1,324,201 + Dsui_1260 0.53 -1.8 1,324,267 + Dsui_1260 0.65 +0.6 1,324,275 - +0.6 1,324,300 - Dsui_1260 0.70 -1.0 1,324,311 + Dsui_1260 0.72 +0.6 1,324,319 - +0.6 1,324,349 - Dsui_1260 0.79 +0.6 1,324,352 + Dsui_1260 0.80 -0.8 1,324,435 + -1.0 1,324,497 - -1.4 1,324,509 + -1.0 1,324,526 - -1.4 1,324,548 - +0.6 1,324,687 + Dsui_1261 0.17 -0.5 1,324,696 + Dsui_1261 0.18 -0.2 1,324,767 + Dsui_1261 0.27 +0.3 1,324,767 + Dsui_1261 0.27 -0.2 1,324,775 - Dsui_1261 0.28 -2.9 1,324,775 - Dsui_1261 0.28 +0.6 1,324,775 - Dsui_1261 0.28 -2.6 1,324,802 - Dsui_1261 0.31 -1.0 1,324,926 - +0.6 1,324,985 + Dsui_1261 0.54 -0.5 1,324,993 - Dsui_1261 0.55 -3.1 1,325,069 + Dsui_1261 0.65 -0.5 1,325,098 - Dsui_1261 0.68 +0.6 1,325,111 + Dsui_1261 0.70 -0.9 1,325,134 - -0.4 1,325,218 + Dsui_1261 0.83 -0.3 1,325,316 + -0.1 1,325,316 + +0.3 1,325,359 - +0.6 1,325,364 - -1.4 1,325,473 + +0.6 1,325,507 + +0.6 1,325,529 + -1.4 1,325,537 - -0.1 1,325,550 + -1.4 1,325,550 + +0.6 1,325,769 + Dsui_1262 0.19 +0.6 1,325,806 + Dsui_1262 0.21 -1.0 1,325,848 - Dsui_1262 0.24 +0.5 1,325,911 - Dsui_1262 0.28 -0.4 1,326,071 + +0.6 1,326,071 - Dsui_1262 0.39 +0.6 1,326,152 + Dsui_1262 0.45 -0.4 1,326,161 - Dsui_1262 0.46 +0.9 1,326,206 - Dsui_1262 0.49 +0.6 1,326,254 + +0.6 1,326,262 - Dsui_1262 0.52 +0.0 1,326,325 - Dsui_1262 0.57 +0.6
Or see this region's nucleotide sequence