Strain Fitness in Dechlorosoma suillum PS around Dsui_1237

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1235 and Dsui_1236 overlap by 4 nucleotidesDsui_1236 and Dsui_1237 are separated by 8 nucleotidesDsui_1237 and Dsui_1238 are separated by 242 nucleotides Dsui_1235: Dsui_1235 - hypothetical protein, at 1,293,733 to 1,294,290 _1235 Dsui_1236: Dsui_1236 - molybdenum cofactor synthesis domain protein, at 1,294,287 to 1,294,880 _1236 Dsui_1237: Dsui_1237 - hypothetical protein, at 1,294,889 to 1,296,406 _1237 Dsui_1238: Dsui_1238 - thymidylate synthase, at 1,296,649 to 1,297,443 _1238 Position (kb) 1294 1295 1296 1297Strain fitness (log2 ratio) -1 0 1 2at 1294.011 kb on + strand, within Dsui_1235at 1294.109 kb on + strand, within Dsui_1235at 1294.119 kb on - strand, within Dsui_1235at 1294.166 kb on + strand, within Dsui_1235at 1294.188 kb on - strandat 1294.325 kb on - strandat 1294.393 kb on + strand, within Dsui_1236at 1294.451 kb on + strand, within Dsui_1236at 1294.554 kb on + strand, within Dsui_1236at 1294.567 kb on - strand, within Dsui_1236at 1294.648 kb on + strand, within Dsui_1236at 1294.671 kb on + strand, within Dsui_1236at 1294.705 kb on - strand, within Dsui_1236at 1294.742 kb on + strand, within Dsui_1236at 1294.750 kb on - strand, within Dsui_1236at 1294.757 kb on - strand, within Dsui_1236at 1294.786 kb on + strand, within Dsui_1236at 1294.786 kb on + strand, within Dsui_1236at 1294.786 kb on + strand, within Dsui_1236at 1294.794 kb on - strand, within Dsui_1236at 1294.794 kb on - strand, within Dsui_1236at 1294.794 kb on - strand, within Dsui_1236at 1294.885 kb on + strandat 1294.906 kb on + strandat 1294.906 kb on + strandat 1294.914 kb on - strandat 1295.044 kb on - strand, within Dsui_1237at 1295.325 kb on - strand, within Dsui_1237at 1295.471 kb on + strand, within Dsui_1237at 1295.471 kb on + strand, within Dsui_1237at 1295.478 kb on + strand, within Dsui_1237at 1295.479 kb on - strand, within Dsui_1237at 1295.557 kb on + strand, within Dsui_1237at 1295.687 kb on + strand, within Dsui_1237at 1295.734 kb on + strand, within Dsui_1237at 1295.734 kb on + strand, within Dsui_1237at 1295.815 kb on + strand, within Dsui_1237at 1295.849 kb on + strand, within Dsui_1237at 1295.852 kb on - strandat 1295.854 kb on + strand, within Dsui_1237at 1295.862 kb on - strand, within Dsui_1237at 1295.862 kb on - strand, within Dsui_1237at 1295.920 kb on - strand, within Dsui_1237at 1295.920 kb on - strand, within Dsui_1237at 1296.131 kb on - strand, within Dsui_1237at 1296.162 kb on + strand, within Dsui_1237at 1296.197 kb on + strand, within Dsui_1237at 1296.201 kb on - strand, within Dsui_1237at 1296.236 kb on - strand, within Dsui_1237at 1296.264 kb on - strandat 1296.317 kb on + strandat 1296.362 kb on + strandat 1296.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,294,011 + Dsui_1235 0.50 +2.6
1,294,109 + Dsui_1235 0.67 +2.3
1,294,119 - Dsui_1235 0.69 +0.6
1,294,166 + Dsui_1235 0.78 +2.4
1,294,188 - -0.4
1,294,325 - -0.4
1,294,393 + Dsui_1236 0.18 -0.3
1,294,451 + Dsui_1236 0.28 -0.1
1,294,554 + Dsui_1236 0.45 +0.0
1,294,567 - Dsui_1236 0.47 -0.4
1,294,648 + Dsui_1236 0.61 -0.3
1,294,671 + Dsui_1236 0.65 -0.3
1,294,705 - Dsui_1236 0.70 +0.6
1,294,742 + Dsui_1236 0.77 -0.3
1,294,750 - Dsui_1236 0.78 +0.6
1,294,757 - Dsui_1236 0.79 -1.4
1,294,786 + Dsui_1236 0.84 -0.1
1,294,786 + Dsui_1236 0.84 -0.5
1,294,786 + Dsui_1236 0.84 -0.3
1,294,794 - Dsui_1236 0.85 -1.4
1,294,794 - Dsui_1236 0.85 -0.4
1,294,794 - Dsui_1236 0.85 +0.6
1,294,885 + -0.3
1,294,906 + -0.3
1,294,906 + -0.1
1,294,914 - +0.7
1,295,044 - Dsui_1237 0.10 -1.0
1,295,325 - Dsui_1237 0.29 -1.4
1,295,471 + Dsui_1237 0.38 +0.6
1,295,471 + Dsui_1237 0.38 -0.4
1,295,478 + Dsui_1237 0.39 +0.6
1,295,479 - Dsui_1237 0.39 +0.8
1,295,557 + Dsui_1237 0.44 -0.4
1,295,687 + Dsui_1237 0.53 -0.4
1,295,734 + Dsui_1237 0.56 +0.6
1,295,734 + Dsui_1237 0.56 +0.6
1,295,815 + Dsui_1237 0.61 -0.0
1,295,849 + Dsui_1237 0.63 +0.6
1,295,852 - +0.6
1,295,854 + Dsui_1237 0.64 -0.4
1,295,862 - Dsui_1237 0.64 +0.6
1,295,862 - Dsui_1237 0.64 -1.7
1,295,920 - Dsui_1237 0.68 -0.4
1,295,920 - Dsui_1237 0.68 -1.0
1,296,131 - Dsui_1237 0.82 -1.0
1,296,162 + Dsui_1237 0.84 -0.4
1,296,197 + Dsui_1237 0.86 -1.0
1,296,201 - Dsui_1237 0.86 +0.6
1,296,236 - Dsui_1237 0.89 +2.2
1,296,264 - +1.6
1,296,317 + -1.4
1,296,362 + -1.4
1,296,527 - -0.4

Or see this region's nucleotide sequence