Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1234 and Dsui_1235 are separated by 77 nucleotides Dsui_1235 and Dsui_1236 overlap by 4 nucleotides Dsui_1236 and Dsui_1237 are separated by 8 nucleotides
Dsui_1234: Dsui_1234 - putative Zn-dependent protease-like protein, at 1,292,261 to 1,293,655
_1234
Dsui_1235: Dsui_1235 - hypothetical protein, at 1,293,733 to 1,294,290
_1235
Dsui_1236: Dsui_1236 - molybdenum cofactor synthesis domain protein, at 1,294,287 to 1,294,880
_1236
Dsui_1237: Dsui_1237 - hypothetical protein, at 1,294,889 to 1,296,406
_1237
Position (kb)
1293
1294
1295 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1292.959 kb on - strand, within Dsui_1234 at 1293.077 kb on - strand, within Dsui_1234 at 1293.179 kb on + strand, within Dsui_1234 at 1293.187 kb on - strand, within Dsui_1234 at 1293.337 kb on - strand, within Dsui_1234 at 1293.337 kb on - strand, within Dsui_1234 at 1293.356 kb on - strand, within Dsui_1234 at 1293.403 kb on + strand, within Dsui_1234 at 1293.415 kb on - strand, within Dsui_1234 at 1293.415 kb on - strand, within Dsui_1234 at 1293.445 kb on + strand, within Dsui_1234 at 1293.488 kb on + strand at 1293.666 kb on + strand at 1293.681 kb on - strand at 1293.701 kb on + strand at 1293.703 kb on + strand at 1293.709 kb on - strand at 1293.711 kb on - strand at 1293.711 kb on - strand at 1293.721 kb on - strand at 1293.721 kb on - strand at 1294.011 kb on + strand, within Dsui_1235 at 1294.109 kb on + strand, within Dsui_1235 at 1294.119 kb on - strand, within Dsui_1235 at 1294.166 kb on + strand, within Dsui_1235 at 1294.188 kb on - strand at 1294.325 kb on - strand at 1294.393 kb on + strand, within Dsui_1236 at 1294.451 kb on + strand, within Dsui_1236 at 1294.554 kb on + strand, within Dsui_1236 at 1294.567 kb on - strand, within Dsui_1236 at 1294.648 kb on + strand, within Dsui_1236 at 1294.671 kb on + strand, within Dsui_1236 at 1294.705 kb on - strand, within Dsui_1236 at 1294.742 kb on + strand, within Dsui_1236 at 1294.750 kb on - strand, within Dsui_1236 at 1294.757 kb on - strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.885 kb on + strand at 1294.906 kb on + strand at 1294.906 kb on + strand at 1294.914 kb on - strand at 1295.044 kb on - strand, within Dsui_1237
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,292,959 - Dsui_1234 0.50 -0.1 1,293,077 - Dsui_1234 0.58 +0.3 1,293,179 + Dsui_1234 0.66 -1.0 1,293,187 - Dsui_1234 0.66 +0.4 1,293,337 - Dsui_1234 0.77 +0.7 1,293,337 - Dsui_1234 0.77 +0.3 1,293,356 - Dsui_1234 0.78 +0.3 1,293,403 + Dsui_1234 0.82 +0.2 1,293,415 - Dsui_1234 0.83 +1.4 1,293,415 - Dsui_1234 0.83 +0.2 1,293,445 + Dsui_1234 0.85 -2.4 1,293,488 + +0.6 1,293,666 + -0.4 1,293,681 - +1.0 1,293,701 + +0.7 1,293,703 + -0.1 1,293,709 - -1.0 1,293,711 - -1.4 1,293,711 - -0.4 1,293,721 - -1.0 1,293,721 - +0.6 1,294,011 + Dsui_1235 0.50 +2.6 1,294,109 + Dsui_1235 0.67 +2.3 1,294,119 - Dsui_1235 0.69 +0.6 1,294,166 + Dsui_1235 0.78 +2.4 1,294,188 - -0.4 1,294,325 - -0.4 1,294,393 + Dsui_1236 0.18 -0.3 1,294,451 + Dsui_1236 0.28 -0.1 1,294,554 + Dsui_1236 0.45 +0.0 1,294,567 - Dsui_1236 0.47 -0.4 1,294,648 + Dsui_1236 0.61 -0.3 1,294,671 + Dsui_1236 0.65 -0.3 1,294,705 - Dsui_1236 0.70 +0.6 1,294,742 + Dsui_1236 0.77 -0.3 1,294,750 - Dsui_1236 0.78 +0.6 1,294,757 - Dsui_1236 0.79 -1.4 1,294,786 + Dsui_1236 0.84 -0.1 1,294,786 + Dsui_1236 0.84 -0.5 1,294,786 + Dsui_1236 0.84 -0.3 1,294,794 - Dsui_1236 0.85 -1.4 1,294,794 - Dsui_1236 0.85 -0.4 1,294,794 - Dsui_1236 0.85 +0.6 1,294,885 + -0.3 1,294,906 + -0.3 1,294,906 + -0.1 1,294,914 - +0.7 1,295,044 - Dsui_1237 0.10 -1.0
Or see this region's nucleotide sequence