Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1195 and Dsui_1196 overlap by 4 nucleotides Dsui_1196 and Dsui_1197 are separated by 60 nucleotides Dsui_1197 and Dsui_1198 are separated by 1 nucleotides
Dsui_1195: Dsui_1195 - phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,247,540 to 1,248,514
_1195
Dsui_1196: Dsui_1196 - metalloprotein, YbeY/UPF0054 family, at 1,248,511 to 1,248,969
_1196
Dsui_1197: Dsui_1197 - putative Mg2+ and Co2+ transporter CorC, at 1,249,030 to 1,249,875
_1197
Dsui_1198: Dsui_1198 - apolipoprotein N-acyltransferase, at 1,249,877 to 1,251,394
_1198
Position (kb)
1249
1250 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1248.035 kb on + strand, within Dsui_1195 at 1248.222 kb on + strand, within Dsui_1195 at 1248.257 kb on - strand, within Dsui_1195 at 1248.268 kb on - strand, within Dsui_1195 at 1248.268 kb on - strand, within Dsui_1195 at 1248.358 kb on + strand, within Dsui_1195 at 1248.361 kb on - strand, within Dsui_1195 at 1248.410 kb on + strand, within Dsui_1195 at 1248.479 kb on + strand at 1248.515 kb on - strand at 1249.028 kb on - strand at 1249.058 kb on - strand at 1249.073 kb on - strand at 1249.082 kb on + strand at 1249.094 kb on - strand at 1249.196 kb on - strand, within Dsui_1197 at 1249.286 kb on - strand, within Dsui_1197 at 1249.369 kb on + strand, within Dsui_1197 at 1249.377 kb on - strand, within Dsui_1197 at 1249.394 kb on - strand, within Dsui_1197 at 1249.585 kb on + strand, within Dsui_1197 at 1249.621 kb on - strand, within Dsui_1197 at 1249.637 kb on - strand, within Dsui_1197 at 1249.644 kb on + strand, within Dsui_1197 at 1249.801 kb on + strand at 1249.827 kb on + strand at 1249.847 kb on + strand at 1249.924 kb on - strand at 1250.079 kb on + strand, within Dsui_1198 at 1250.081 kb on - strand at 1250.169 kb on + strand, within Dsui_1198 at 1250.177 kb on - strand at 1250.177 kb on - strand at 1250.283 kb on + strand, within Dsui_1198 at 1250.559 kb on + strand, within Dsui_1198 at 1250.559 kb on + strand, within Dsui_1198 at 1250.645 kb on - strand at 1250.650 kb on - strand at 1250.656 kb on - strand at 1250.850 kb on + strand, within Dsui_1198 at 1250.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,248,035 + Dsui_1195 0.51 -0.4 1,248,222 + Dsui_1195 0.70 -0.7 1,248,257 - Dsui_1195 0.74 -0.5 1,248,268 - Dsui_1195 0.75 -1.8 1,248,268 - Dsui_1195 0.75 -1.0 1,248,358 + Dsui_1195 0.84 +0.5 1,248,361 - Dsui_1195 0.84 -1.0 1,248,410 + Dsui_1195 0.89 -0.3 1,248,479 + +0.5 1,248,515 - -0.5 1,249,028 - -2.6 1,249,058 - -0.5 1,249,073 - -0.5 1,249,082 + -3.5 1,249,094 - -1.8 1,249,196 - Dsui_1197 0.20 -0.5 1,249,286 - Dsui_1197 0.30 -2.0 1,249,369 + Dsui_1197 0.40 -2.5 1,249,377 - Dsui_1197 0.41 -2.3 1,249,394 - Dsui_1197 0.43 +0.5 1,249,585 + Dsui_1197 0.66 -2.1 1,249,621 - Dsui_1197 0.70 -0.5 1,249,637 - Dsui_1197 0.72 -1.5 1,249,644 + Dsui_1197 0.73 -2.2 1,249,801 + -2.0 1,249,827 + -2.5 1,249,847 + -1.8 1,249,924 - +0.5 1,250,079 + Dsui_1198 0.13 -3.0 1,250,081 - +0.5 1,250,169 + Dsui_1198 0.19 -4.5 1,250,177 - +0.5 1,250,177 - -1.0 1,250,283 + Dsui_1198 0.27 -3.2 1,250,559 + Dsui_1198 0.45 -2.9 1,250,559 + Dsui_1198 0.45 -3.0 1,250,645 - +0.5 1,250,650 - +0.5 1,250,656 - -0.5 1,250,850 + Dsui_1198 0.64 -2.3 1,250,868 - +0.5
Or see this region's nucleotide sequence