Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1177 and Dsui_1178 are separated by 102 nucleotides Dsui_1178 and Dsui_1179 overlap by 4 nucleotides Dsui_1179 and Dsui_1180 are separated by 286 nucleotides
Dsui_1177: Dsui_1177 - Ethylbenzene dehydrogenase, at 1,231,380 to 1,232,249
_1177
Dsui_1178: Dsui_1178 - ferredoxin-type protein NapF, at 1,232,352 to 1,232,852
_1178
Dsui_1179: Dsui_1179 - ribosome-associated heat shock protein implicated in recycling of 50S subunit, at 1,232,849 to 1,233,268
_1179
Dsui_1180: Dsui_1180 - response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein, at 1,233,555 to 1,234,136
_1180
Position (kb)
1232
1233 Strain fitness (log2 ratio)
-2
-1
0
1 at 1231.380 kb on - strand at 1231.380 kb on - strand at 1231.408 kb on - strand at 1231.428 kb on - strand at 1231.470 kb on - strand, within Dsui_1177 at 1231.516 kb on - strand, within Dsui_1177 at 1231.544 kb on + strand, within Dsui_1177 at 1231.568 kb on + strand, within Dsui_1177 at 1231.569 kb on + strand, within Dsui_1177 at 1231.569 kb on + strand, within Dsui_1177 at 1231.570 kb on - strand, within Dsui_1177 at 1231.588 kb on + strand, within Dsui_1177 at 1231.680 kb on - strand, within Dsui_1177 at 1231.788 kb on - strand, within Dsui_1177 at 1231.858 kb on - strand, within Dsui_1177 at 1231.874 kb on + strand, within Dsui_1177 at 1231.958 kb on - strand, within Dsui_1177 at 1232.060 kb on + strand, within Dsui_1177 at 1232.068 kb on - strand, within Dsui_1177 at 1232.088 kb on - strand at 1232.197 kb on + strand at 1232.224 kb on - strand at 1232.306 kb on - strand at 1232.357 kb on - strand at 1232.357 kb on - strand at 1232.441 kb on + strand, within Dsui_1178 at 1232.633 kb on + strand, within Dsui_1178 at 1232.658 kb on + strand at 1232.914 kb on - strand, within Dsui_1179 at 1233.052 kb on + strand, within Dsui_1179 at 1233.105 kb on - strand, within Dsui_1179 at 1233.242 kb on + strand at 1233.257 kb on + strand at 1233.292 kb on - strand at 1233.396 kb on + strand at 1233.533 kb on + strand at 1233.593 kb on + strand at 1233.598 kb on - strand at 1233.684 kb on - strand, within Dsui_1180 at 1233.754 kb on - strand, within Dsui_1180 at 1233.791 kb on + strand, within Dsui_1180
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,231,380 - -0.2 1,231,380 - +0.1 1,231,408 - -0.3 1,231,428 - -1.0 1,231,470 - Dsui_1177 0.10 -1.4 1,231,516 - Dsui_1177 0.16 -0.4 1,231,544 + Dsui_1177 0.19 -0.0 1,231,568 + Dsui_1177 0.22 +0.2 1,231,569 + Dsui_1177 0.22 +0.4 1,231,569 + Dsui_1177 0.22 +1.0 1,231,570 - Dsui_1177 0.22 -0.4 1,231,588 + Dsui_1177 0.24 +0.0 1,231,680 - Dsui_1177 0.34 -1.0 1,231,788 - Dsui_1177 0.47 -0.0 1,231,858 - Dsui_1177 0.55 -1.8 1,231,874 + Dsui_1177 0.57 +0.1 1,231,958 - Dsui_1177 0.66 -2.2 1,232,060 + Dsui_1177 0.78 +1.2 1,232,068 - Dsui_1177 0.79 -1.4 1,232,088 - -0.4 1,232,197 + -0.2 1,232,224 - +0.6 1,232,306 - -1.0 1,232,357 - -1.4 1,232,357 - +1.6 1,232,441 + Dsui_1178 0.18 +0.3 1,232,633 + Dsui_1178 0.56 -0.4 1,232,658 + +1.1 1,232,914 - Dsui_1179 0.15 +0.7 1,233,052 + Dsui_1179 0.48 -2.0 1,233,105 - Dsui_1179 0.61 +0.6 1,233,242 + -1.0 1,233,257 + +0.6 1,233,292 - -0.4 1,233,396 + -0.4 1,233,533 + -0.4 1,233,593 + -1.0 1,233,598 - +0.5 1,233,684 - Dsui_1180 0.22 -0.5 1,233,754 - Dsui_1180 0.34 +0.9 1,233,791 + Dsui_1180 0.41 -1.0
Or see this region's nucleotide sequence