Strain Fitness in Dechlorosoma suillum PS around Dsui_1171

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1168 and Dsui_1169 overlap by 4 nucleotidesDsui_1169 and Dsui_1170 are separated by 1 nucleotidesDsui_1170 and Dsui_1171 overlap by 4 nucleotidesDsui_1171 and Dsui_1172 are separated by 10 nucleotides Dsui_1168: Dsui_1168 - heme exporter protein CcmB, at 1,224,292 to 1,224,960 _1168 Dsui_1169: Dsui_1169 - heme exporter protein CcmC, at 1,224,957 to 1,225,709 _1169 Dsui_1170: Dsui_1170 - heme exporter protein CcmD, at 1,225,711 to 1,225,905 _1170 Dsui_1171: Dsui_1171 - cytochrome c-type biogenesis protein CcmE, at 1,225,902 to 1,226,420 _1171 Dsui_1172: Dsui_1172 - c-type cytochrome biogenesis protein CcmF, at 1,226,431 to 1,228,422 _1172 Position (kb) 1225 1226 1227Strain fitness (log2 ratio) -1 0 1 2at 1224.962 kb on + strandat 1225.703 kb on + strandat 1225.870 kb on + strand, within Dsui_1170at 1226.336 kb on + strand, within Dsui_1171

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,224,962 + +2.7
1,225,703 + +0.1
1,225,870 + Dsui_1170 0.82 +0.1
1,226,336 + Dsui_1171 0.84 +1.8

Or see this region's nucleotide sequence