Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1109 and Dsui_1110 are separated by 15 nucleotides Dsui_1110 and Dsui_1111 are separated by 15 nucleotides Dsui_1111 and Dsui_1112 are separated by 55 nucleotides
Dsui_1109: Dsui_1109 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,155,948 to 1,156,748
_1109
Dsui_1110: Dsui_1110 - branched-chain amino acid ABC-type transport system, permease component, at 1,156,764 to 1,157,657
_1110
Dsui_1111: Dsui_1111 - ABC-type branched-chain amino acid transport system, permease component, at 1,157,673 to 1,158,740
_1111
Dsui_1112: Dsui_1112 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,158,796 to 1,160,124
_1112
Position (kb)
1157
1158
1159 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1156.723 kb on + strand at 1156.730 kb on + strand at 1156.737 kb on - strand at 1156.950 kb on + strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.395 kb on - strand, within Dsui_1110 at 1157.395 kb on - strand, within Dsui_1110 at 1157.592 kb on + strand at 1157.651 kb on + strand at 1157.659 kb on - strand at 1157.659 kb on - strand at 1157.696 kb on + strand at 1157.704 kb on - strand at 1157.767 kb on + strand at 1157.794 kb on + strand, within Dsui_1111 at 1157.982 kb on - strand, within Dsui_1111 at 1158.316 kb on - strand, within Dsui_1111 at 1158.353 kb on + strand, within Dsui_1111 at 1158.407 kb on + strand, within Dsui_1111 at 1158.408 kb on + strand, within Dsui_1111 at 1158.454 kb on + strand, within Dsui_1111 at 1158.523 kb on + strand, within Dsui_1111 at 1158.613 kb on + strand, within Dsui_1111 at 1158.658 kb on - strand at 1158.686 kb on - strand at 1158.739 kb on + strand at 1158.754 kb on + strand at 1158.777 kb on + strand at 1158.786 kb on + strand at 1158.860 kb on + strand at 1158.895 kb on + strand at 1158.929 kb on + strand, within Dsui_1112 at 1159.008 kb on + strand, within Dsui_1112 at 1159.022 kb on + strand, within Dsui_1112 at 1159.135 kb on + strand, within Dsui_1112 at 1159.145 kb on + strand, within Dsui_1112 at 1159.148 kb on - strand, within Dsui_1112 at 1159.250 kb on + strand, within Dsui_1112 at 1159.298 kb on + strand, within Dsui_1112 at 1159.308 kb on + strand, within Dsui_1112 at 1159.533 kb on - strand, within Dsui_1112 at 1159.624 kb on + strand, within Dsui_1112
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,156,723 + -1.0 1,156,730 + +0.6 1,156,737 - +0.6 1,156,950 + Dsui_1110 0.21 +0.6 1,157,127 - Dsui_1110 0.41 +0.6 1,157,127 - Dsui_1110 0.41 +0.6 1,157,127 - Dsui_1110 0.41 +0.6 1,157,395 - Dsui_1110 0.71 -0.4 1,157,395 - Dsui_1110 0.71 +0.6 1,157,592 + -1.8 1,157,651 + -1.4 1,157,659 - -1.0 1,157,659 - +0.6 1,157,696 + -0.4 1,157,704 - -1.0 1,157,767 + +0.5 1,157,794 + Dsui_1111 0.11 +0.5 1,157,982 - Dsui_1111 0.29 -1.8 1,158,316 - Dsui_1111 0.60 +0.5 1,158,353 + Dsui_1111 0.64 -1.5 1,158,407 + Dsui_1111 0.69 -1.0 1,158,408 + Dsui_1111 0.69 -0.5 1,158,454 + Dsui_1111 0.73 +0.5 1,158,523 + Dsui_1111 0.80 -1.8 1,158,613 + Dsui_1111 0.88 -2.0 1,158,658 - -3.2 1,158,686 - -0.5 1,158,739 + -1.5 1,158,754 + +0.5 1,158,777 + -0.5 1,158,786 + +0.5 1,158,860 + +0.5 1,158,895 + +0.5 1,158,929 + Dsui_1112 0.10 +0.5 1,159,008 + Dsui_1112 0.16 +0.5 1,159,022 + Dsui_1112 0.17 +0.5 1,159,135 + Dsui_1112 0.26 +0.5 1,159,145 + Dsui_1112 0.26 -1.0 1,159,148 - Dsui_1112 0.26 -0.5 1,159,250 + Dsui_1112 0.34 +0.5 1,159,298 + Dsui_1112 0.38 +0.5 1,159,308 + Dsui_1112 0.39 +0.5 1,159,533 - Dsui_1112 0.55 +0.5 1,159,624 + Dsui_1112 0.62 +0.5
Or see this region's nucleotide sequence